Browse Element(s) Details


OsAffx.17017.1.S1_at

Description tigr:9636.m01597
TID=OsAffx.17017.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1591011/11hypothetical protein
LOC_Os06g349103/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15880OsAffx.5831.1.S1_at11/118+9659514..9665037NB-ARC domain containing protein
LOC_Os08g15880OsAffx.29724.6.S1_x_at1/118+9659514..9665037NB-ARC domain containing protein
LOC_Os08g15890OsAffx.29226.1.S1_at11/118+9669992..9670865hypothetical protein
LOC_Os08g15900OsAffx.22682.2.S1_at11/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.22682.1.S1_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.15500.1.S1_x_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.13264.1.S1_x_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15910OsAffx.17017.1.S1_at11/118+9684823..9686198hypothetical protein
LOC_Os08g15920OsAffx.29227.1.S1_s_at11/118+9688891..9690586hypothetical protein
LOC_Os08g15920Os.38764.1.S1_x_at4/118+9688891..9690586hypothetical protein
LOC_Os08g15930OsAffx.5832.1.S1_at11/118+9697179..9697796hypothetical protein
LOC_Os08g15940NANA8+9698456..9699876transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15950OsAffx.5833.1.S1_at10/118+9700957..9701941hypothetical protein
LOC_Os08g15960NANA8+9704610..9704942hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17017.1.S1_at--17--9931Chr08:9684860..9684884 (25 bp)
TACTGACCGCTCTTGTGGACCGATG
LOC_Os08g15910
OsAffx.17017.1.S1_at--688--712Chr08:9684952..9684976 (25 bp)
ATGATCCTGGCTCTTCCAATATGGG
LOC_Os08g15910
OsAffx.17017.1.S1_at--126--1131Chr08:9684991..9685234 (25 bp)
AGTGACACTGCTTCCGACATGGCTT
LOC_Os08g15910
OsAffx.17017.1.S1_at--209--1671Chr08:9685299..9685323 (25 bp)
AGCCCTTGCGTGGTTGTACAGGCAG
LOC_Os08g15910
OsAffx.17017.1.S1_at--498--4492Chr08:9685337..9685361 (25 bp)
GCCGGAGGTCTAGTGCAGATGCCAA
LOC_Os08g15910
OsAffx.17017.1.S1_at--236--1051Chr08:9685467..9685489 (23 bp)
AGGGTCTGGATGTGGATTCGCTTAC
LOC_Os08g15910
OsAffx.17017.1.S1_at--37--9972Chr08:9685487..9685511 (25 bp)
TACCGGTTGGTCGTCCTACATGGAG
LOC_Os08g15910
OsAffx.17017.1.S1_at--20--3951Chr08:9685520..9685544 (25 bp)
CGGCATGCCCATTCCAGGATGAGGA
LOC_Os08g15910
OsAffx.17017.1.S1_at--489--7991Chr08:9685536..9685560 (25 bp)
GGATGAGGATCGACGTCCCACAGTT
LOC_Os08g15910
OsAffx.17017.1.S1_at--632--10311Chr08:9685563..9685587 (25 bp)
TTTCTATGGGAAAGCCGTCACCTGT
LOC_Os08g15910
OsAffx.17017.1.S1_at--945--4011Chr08:9685578..9685602 (25 bp)
CGTCACCTGTAGTAGGCCGCAGAAA
LOC_Os08g15910
Target Sequence 
TACTGACCGCTCTTGTGGACCGATGGCGCCCAGAGACCCATACTTTCCACCTTCACAGTGGAGAGCTAACGGTGACACTG
GAGGATGTTGCCATGATCCTGGCTCTTCCAATATGGGGCCAGGCAGTTACCAGTGACACTGCTTCCGACATGGCTTCCTG
GATGTGGCTGCCATTGCTAGAGGATTGGGATGAGGCGGGTACATACAGTTGGGGTTCTGCAGCCCTTGCGTGGTTGTACA
GGCAGCTATGTGATGCTTGCCGGAGGTCTAGTGCAGATGCCAACTTGGCAGGGTCTGGATGTGGATTCGCTTACCGGTTG
GTCGTCCTACATGGAGGCAACATCCGGCATGCCCATTCCAGGATGAGGATCGACGTCCCACAGTTGCTTTCTATGGGAAA
GCCGTCACCTGTAGTAGGCCGCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17017.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis