Browse Element(s) Details


OsAffx.15500.1.S1_x_at

Description tigr:9634.m01917
TID=OsAffx.15500.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g197907/11hypothetical protein
LOC_Os06g223201/11Zinc knuckle family protein
LOC_Os08g159001/11transposase related protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19730Os.9889.1.S1_at10/116+11263737..11280673HEAT repeat family protein, expressed
LOC_Os06g19740OsAffx.27718.1.S1_at11/116+11282479..11284665expressed protein
LOC_Os06g19750Os.6730.1.S1_at11/116+11287004..11287757expressed protein
LOC_Os06g19760OsAffx.4875.1.S1_at11/116+11290690..11291935hypothetical protein
LOC_Os06g19770OsAffx.27719.1.S1_at11/116+11295648..11295857hypothetical protein
LOC_Os06g19780NANA6+11297169..11298185hypothetical protein
LOC_Os06g19790OsAffx.15500.1.S1_x_at7/116+11302571..11303263hypothetical protein
LOC_Os06g19800OsAffx.4876.1.S1_x_at11/116+11308412..11317283BURP domain containing protein, expressed
LOC_Os06g19800OsAffx.2299.1.S1_s_at1/116+11308412..11317283BURP domain containing protein, expressed
LOC_Os06g19810OsAffx.15501.1.S1_at11/116+11318547..11318771hypothetical protein
LOC_Os06g19820OsAffx.24949.3.S1_x_at11/116+11319632..11321203hypothetical protein
LOC_Os06g19820OsAffx.24949.1.S1_x_at5/116+11319632..11321203hypothetical protein
LOC_Os06g19830Os.45902.1.A1_x_at2/116+11324821..11326860hypothetical protein
LOC_Os06g19830Os.10263.1.S1_at1/116+11324821..11326860hypothetical protein
LOC_Os06g19830OsAffx.727.1.S1_x_at1/116+11324821..11326860hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15500.1.S1_x_at--16--7091NONE
GTCAACGGCAGTGGGCGCATAAGTT
NONE
OsAffx.15500.1.S1_x_at--864--9711Chr06:11302621..11302642 (22 bp)
TCAACGGCAGTGGGCGCATAAGTTA
LOC_Os06g19790
OsAffx.15500.1.S1_x_at--109--3251Chr06:11302622..11302642 (21 bp)
CAACGGCAGTGGGCGCATAAGTTAG
LOC_Os06g19790
OsAffx.15500.1.S1_x_at--553--8391NONE
GGCGCATAAGTTAGTGGAGGCATTC
NONE
OsAffx.15500.1.S1_x_at--923--4571NONE
GCGCATAAGTTAGTGGAGGCATTCA
NONE
OsAffx.15500.1.S1_x_at--1098--4091NONE
CGCATAAGTTAGTGGAGGCATTCAA
NONE
OsAffx.15500.1.S1_x_at--565--8012Chr06:11303152..11303176 (25 bp)
GGAGGCATTCAAGCACTTGAGGTCG
LOC_Os06g19790
OsAffx.15500.1.S1_x_at--597--2051Chr06:11303166..11303190 (25 bp)
ACTTGAGGTCGGTGTTAGCAATTGA
LOC_Os06g19790
OsAffx.15500.1.S1_x_at--889--5193Chr08:9683017..9683187 (25 bp)
GCAATTGATGGGACCTTCTTGACCG
LOC_Os08g15900
OsAffx.15500.1.S1_x_at--562--6232Chr06:11303189..11303213 (25 bp)
GATGGGACCTTCTTGACCGGTAAAT
LOC_Os06g19790
OsAffx.15500.1.S1_x_at--435--9831Chr06:11303209..11303233 (25 bp)
TAAATTTAGGGGTGTATTGCTCACA
LOC_Os06g19790
Target Sequence 
GTCAACGGCAGTGGGCGCATAAGTTAGTGGAGGCATTCAAGCACTTGAGGTCGGTGTTAGCAATTGATGGGACCTTCTTG
ACCGGTAAATTTAGGGGTGTATTGCTCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15500.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis