Browse Element(s) Details


OsAffx.2299.1.S1_s_at

Description gb:NM_191699.1
DB_XREF= gi:34910481
GEN=P0456F08.16
TID=OsAffx.2299.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0456F08.16 (P0456F08.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g198001/11BURP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19740OsAffx.27718.1.S1_at11/116+11282479..11284665expressed protein
LOC_Os06g19750Os.6730.1.S1_at11/116+11287004..11287757expressed protein
LOC_Os06g19760OsAffx.4875.1.S1_at11/116+11290690..11291935hypothetical protein
LOC_Os06g19770OsAffx.27719.1.S1_at11/116+11295648..11295857hypothetical protein
LOC_Os06g19780NANA6+11297169..11298185hypothetical protein
LOC_Os06g19790OsAffx.15500.1.S1_x_at7/116+11302571..11303263hypothetical protein
LOC_Os06g19800OsAffx.4876.1.S1_x_at11/116+11308412..11317283BURP domain containing protein, expressed
LOC_Os06g19800OsAffx.2299.1.S1_s_at1/116+11308412..11317283BURP domain containing protein, expressed
LOC_Os06g19810OsAffx.15501.1.S1_at11/116+11318547..11318771hypothetical protein
LOC_Os06g19820OsAffx.24949.3.S1_x_at11/116+11319632..11321203hypothetical protein
LOC_Os06g19820OsAffx.24949.1.S1_x_at5/116+11319632..11321203hypothetical protein
LOC_Os06g19830Os.45902.1.A1_x_at2/116+11324821..11326860hypothetical protein
LOC_Os06g19830Os.10263.1.S1_at1/116+11324821..11326860hypothetical protein
LOC_Os06g19830OsAffx.727.1.S1_x_at1/116+11324821..11326860hypothetical protein
LOC_Os06g19840OsAffx.27722.1.S1_at11/116+11330739..11331677hypothetical protein
LOC_Os06g19854OsAffx.29246.1.A1_at7/116+11335843..11345775retrotransposon protein, putative, unclassified
LOC_Os06g19854Os.38764.1.S1_x_at4/116+11335843..11345775retrotransposon protein, putative, unclassified
LOC_Os06g19854Os.46610.1.S1_x_at3/116+11335843..11345775retrotransposon protein, putative, unclassified
LOC_Os06g19854Os.10731.1.A1_a_at2/116+11335843..11345775retrotransposon protein, putative, unclassified
LOC_Os06g19854Os.48015.1.A1_x_at2/116+11335843..11345775retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009651biological_processresponse to salt stress
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2299.1.S1_s_at--172--5011Chr01:29854905..29854929 (25 bp)
GCATGGCGCTGCTATAGCCCTGCTT
NONE
OsAffx.2299.1.S1_s_at--83--9111Chr01:29854992..29855016 (25 bp)
TGCTCGCGCGCGGACAGGCTGGACA
NONE
OsAffx.2299.1.S1_s_at--345--1831Chr01:29855016..29855040 (25 bp)
ACGCTCCGGCCGTACGTGACGAGCG
NONE
OsAffx.2299.1.S1_s_at--462--6171Chr01:29855082..29855106 (25 bp)
GAGGATGTGTCGTTGCTTCCATGCT
NONE
OsAffx.2299.1.S1_s_at--236--791Chr01:29855086..29855110 (25 bp)
ATGTGTCGTTGCTTCCATGCTGCCG
NONE
OsAffx.2299.1.S1_s_at--570--9331Chr01:29855119..29855143 (25 bp)
TCGCCGTCGCTGAGAAGGACATACT
NONE
OsAffx.2299.1.S1_s_at--984--5652Chr06:11308881..11308900 (20 bp)
GACATACTGAGTGAACGCGGCCGCC
LOC_Os06g19800
OsAffx.2299.1.S1_s_at--988--9051Chr01:29855436..29855460 (25 bp)
TGCTTTGGCGTGAGGCGGTACATCC
NONE
OsAffx.2299.1.S1_s_at--125--4671Chr01:29855443..29855467 (25 bp)
GCGTGAGGCGGTACATCCTGCGCCA
NONE
OsAffx.2299.1.S1_s_at--15--9171Chr01:29855461..29855485 (25 bp)
TGCGCCACAGGAAGACGCAGCAGGC
NONE
OsAffx.2299.1.S1_s_at--156--3931Chr01:29855557..29855581 (25 bp)
CGGCGCCCTCGGTTGAAGAAAATGC
NONE
Target Sequence 
GCATGGCGCTGCTATAGCCCTGCTTCTGGGGCGCGCGGTGGCAGCCGTCGGAGGAGGAGGCGGCCAGCCGGCACGACGAG
CCGCCGATGCTCGCGCGCGGACAGGCTGGACACGCTCCGGCCGTACGTGACGAGCGCCGCCGCCGGCAATGACGCCCTGC
GGATCGACCCTCCCGCCGAGGATGTGTCGTTGCTTCCATGCTGCCGCGCGCTGGTCGCCGTCGCTGAGAAGGACATACTG
AGTGAACGCGGCCGCCAGTACACCGCCCAGCTTCGCGGCGGCGGTGGTGGGCGCGAGGTGACGTTGGGGTGCTTTGGCGT
GAGGCGGTACATCCTGCGCCACAGGAAGACGCAGCAGGCCCCGACCCCTGCGCACGACCGTGCAGCGCCACCCCAGCTGA
GGTGCCGCACTGGCCCGCGCCTCGCTGCGCCGGCGCCCTCGGTTGAAGAAAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2299.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis