Browse Element(s) Details

OsAffx.29246.1.A1_at

Description

tigr:9636.m01726
TID=OsAffx.29246.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g19854	7/11	retrotransposon protein, putative, unclassified

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g19800	OsAffx.4876.1.S1_x_at	11/11	6	+	11308412..11317283	BURP domain containing protein, expressed
LOC_Os06g19800	OsAffx.2299.1.S1_s_at	1/11	6	+	11308412..11317283	BURP domain containing protein, expressed
LOC_Os06g19810	OsAffx.15501.1.S1_at	11/11	6	+	11318547..11318771	hypothetical protein
LOC_Os06g19820	OsAffx.24949.3.S1_x_at	11/11	6	+	11319632..11321203	hypothetical protein
LOC_Os06g19820	OsAffx.24949.1.S1_x_at	5/11	6	+	11319632..11321203	hypothetical protein
LOC_Os06g19830	Os.45902.1.A1_x_at	2/11	6	+	11324821..11326860	hypothetical protein
LOC_Os06g19830	Os.10263.1.S1_at	1/11	6	+	11324821..11326860	hypothetical protein
LOC_Os06g19830	OsAffx.727.1.S1_x_at	1/11	6	+	11324821..11326860	hypothetical protein
LOC_Os06g19840	OsAffx.27722.1.S1_at	11/11	6	+	11330739..11331677	hypothetical protein
LOC_Os06g19854	OsAffx.29246.1.A1_at	7/11	6	+	11335843..11345775	retrotransposon protein, putative, unclassified
LOC_Os06g19854	Os.38764.1.S1_x_at	4/11	6	+	11335843..11345775	retrotransposon protein, putative, unclassified
LOC_Os06g19854	Os.46610.1.S1_x_at	3/11	6	+	11335843..11345775	retrotransposon protein, putative, unclassified
LOC_Os06g19854	Os.10731.1.A1_a_at	2/11	6	+	11335843..11345775	retrotransposon protein, putative, unclassified
LOC_Os06g19854	Os.48015.1.A1_x_at	2/11	6	+	11335843..11345775	retrotransposon protein, putative, unclassified
LOC_Os06g19870	Os.47463.1.S1_x_at	5/11	6	+	11360097..11365295	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g19870	Os.14491.2.S1_x_at	4/11	6	+	11360097..11365295	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g19880	NA	NA	6	+	11365619..11366026	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g19890	NA	NA	6	+	11367536..11370862	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.29246.1.A1_at--745--443	5	Chr08:2588363..2588458 (25 bp)	GCCATCAACCCGAAGTCCATTGGAT	NONE
OsAffx.29246.1.A1_at--876--351	4	Chr08:2588365..2588459 (24 bp)	CATCAACCCGAAGTCCATTGGATTC	NONE
OsAffx.29246.1.A1_at--540--37	12	Chr11:27035245..27035339 (24 bp)	ATCAACCCGAAGTCCATTGGATTCG	NONE
OsAffx.29246.1.A1_at--354--325	22	Chr12:19252848..19252943 (25 bp)	CAACCCGAAGTCCATTGGATTCGCA	NONE
OsAffx.29246.1.A1_at--943--179	2	Chr02:17667088..17667107 (20 bp)	ACCCTTCCATTGTCGCCGAAGGTCG	NONE
OsAffx.29246.1.A1_at--851--923	2	Chr02:17667088..17667112 (25 bp)	TCCATTGTCGCCGAAGGTCGCCGAA	NONE
OsAffx.29246.1.A1_at--1080--431	3	Chr02:17667089..17667113 (25 bp)	CCATTGTCGCCGAAGGTCGCCGAAA	NONE
OsAffx.29246.1.A1_at--835--3	4	Chr02:17667091..17667114 (24 bp)	ATTGTCGCCGAAGGTCGCCGAAACG	NONE
OsAffx.29246.1.A1_at--654--1069	1	Chr08:10497641..10497665 (25 bp)	TTGTCGCCGAAGGTCGCCGAAACGC	NONE
OsAffx.29246.1.A1_at--750--863	2	Chr08:10497640..10497664 (25 bp)	TGTCGCCGAAGGTCGCCGAAACGCC	NONE
OsAffx.29246.1.A1_at--355--531	1	Chr08:10497633..10497657 (25 bp)	GAAGGTCGCCGAAACGCCGTCGCCA	NONE

Target Sequence

GCCATCAACCCGAAGTCCATTGGATTCGCAGCTGCGAAGTGAAGCCCGGCCACCCTTCCATTGTCGCCGAAGGTCGCCGA
AACGCCGTCGCCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis