Browse Element(s) Details


OsAffx.27722.1.S1_at

Description tigr:9634.m01922
TID=OsAffx.27722.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1984011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19800OsAffx.4876.1.S1_x_at11/116+11308412..11317283BURP domain containing protein, expressed
LOC_Os06g19800OsAffx.2299.1.S1_s_at1/116+11308412..11317283BURP domain containing protein, expressed
LOC_Os06g19810OsAffx.15501.1.S1_at11/116+11318547..11318771hypothetical protein
LOC_Os06g19820OsAffx.24949.3.S1_x_at11/116+11319632..11321203hypothetical protein
LOC_Os06g19820OsAffx.24949.1.S1_x_at5/116+11319632..11321203hypothetical protein
LOC_Os06g19830Os.45902.1.A1_x_at2/116+11324821..11326860hypothetical protein
LOC_Os06g19830Os.10263.1.S1_at1/116+11324821..11326860hypothetical protein
LOC_Os06g19830OsAffx.727.1.S1_x_at1/116+11324821..11326860hypothetical protein
LOC_Os06g19840OsAffx.27722.1.S1_at11/116+11330739..11331677hypothetical protein
LOC_Os06g19854OsAffx.29246.1.A1_at7/116+11335843..11345775retrotransposon protein, putative, unclassified
LOC_Os06g19854Os.38764.1.S1_x_at4/116+11335843..11345775retrotransposon protein, putative, unclassified
LOC_Os06g19854Os.46610.1.S1_x_at3/116+11335843..11345775retrotransposon protein, putative, unclassified
LOC_Os06g19854Os.10731.1.A1_a_at2/116+11335843..11345775retrotransposon protein, putative, unclassified
LOC_Os06g19854Os.48015.1.A1_x_at2/116+11335843..11345775retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27722.1.S1_at--115--1991Chr06:11331588..11331612 (25 bp)
ACTGCGTCATGTCCAGGTGGCACAC
LOC_Os06g19840
OsAffx.27722.1.S1_at--799--6911Chr06:11330986..11331491 (25 bp)
GTAGAATACTACGTACGGCACCCAC
LOC_Os06g19840
OsAffx.27722.1.S1_at--88--5391Chr06:11331086..11331110 (25 bp)
GAACGGTTAACCATGGCTAGGATTA
LOC_Os06g19840
OsAffx.27722.1.S1_at--68--6091Chr06:11331045..11331069 (25 bp)
GAGTAAAATTGATGCCCCATGGCCA
LOC_Os06g19840
OsAffx.27722.1.S1_at--1102--8431Chr06:11331025..11331049 (25 bp)
GGCCACCGCCGACTCAAGTAAGTTA
LOC_Os06g19840
OsAffx.27722.1.S1_at--779--6771Chr06:11331004..11331028 (25 bp)
GTTACTTGGCATCCTTATTGTGTGA
LOC_Os06g19840
OsAffx.27722.1.S1_at--942--8331Chr06:11330949..11330973 (25 bp)
GGCTGAGTGGAAACCTTGGCCTCCA
LOC_Os06g19840
OsAffx.27722.1.S1_at--541--10871Chr06:11330934..11330958 (25 bp)
TTGGCCTCCACCTCAAGAAATTGGC
LOC_Os06g19840
OsAffx.27722.1.S1_at--380--2451Chr06:11330874..11330898 (25 bp)
AAAATTATGGACCTTCCTCACTTGG
LOC_Os06g19840
OsAffx.27722.1.S1_at--401--10871Chr06:11330853..11330877 (25 bp)
TTGGACATCCCCTGTTGCAGAGAAA
LOC_Os06g19840
OsAffx.27722.1.S1_at--392--5531Chr06:11330772..11330796 (25 bp)
GAAAACTCTTGATCCAGATGTGCAA
LOC_Os06g19840
Target Sequence 
ACTGCGTCATGTCCAGGTGGCACACGGACACCACCTCCATAGTCGCTGGTTCCGCACTGCCACTGACCTAGCTGACCAGC
ACCACCATGTAGGCCCTGGTGGCCGGGCCAGCCATGTGGCAGTAGAATACTACGTACGGCACCCACCGTATCTCATCGGC
GATGGCGAGGGAGACTGGCACGAACATGTTGAGAATGTTACCAAGTCGATCGATGGAGAACGGTTAACCATGGCTAGGAT
TAGACTTTTATTGGGCAAGAGTAAAATTGATGCCCCATGGCCACCGCCGACTCAAGTAAGTTACTTGGCATCCTTATTGT
GTGATATTGGAAAAACACCCACAGTAAGGTATTGGGCTGAGTGGAAACCTTGGCCTCCACCTCAAGAAATTGGCACTACA
CATATTCGAGTGAATCAATGGGCAAGTGCAAAATTATGGACCTTCCTCACTTGGACATCCCCTGTTGCAGAGAAATGGGC
AGCTGAACTGAAAGAAAAAGGCATAAGATTGGAAGATGTTGAATTTGATTGGAAAACTCTTGATCCAGATGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27722.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis