Browse Element(s) Details

OsAffx.15501.1.S1_at

Description

tigr:9634.m01919
TID=OsAffx.15501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g19810	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g19770	OsAffx.27719.1.S1_at	11/11	6	+	11295648..11295857	hypothetical protein
LOC_Os06g19780	NA	NA	6	+	11297169..11298185	hypothetical protein
LOC_Os06g19790	OsAffx.15500.1.S1_x_at	7/11	6	+	11302571..11303263	hypothetical protein
LOC_Os06g19800	OsAffx.4876.1.S1_x_at	11/11	6	+	11308412..11317283	BURP domain containing protein, expressed
LOC_Os06g19800	OsAffx.2299.1.S1_s_at	1/11	6	+	11308412..11317283	BURP domain containing protein, expressed
LOC_Os06g19810	OsAffx.15501.1.S1_at	11/11	6	+	11318547..11318771	hypothetical protein
LOC_Os06g19820	OsAffx.24949.3.S1_x_at	11/11	6	+	11319632..11321203	hypothetical protein
LOC_Os06g19820	OsAffx.24949.1.S1_x_at	5/11	6	+	11319632..11321203	hypothetical protein
LOC_Os06g19830	Os.45902.1.A1_x_at	2/11	6	+	11324821..11326860	hypothetical protein
LOC_Os06g19830	Os.10263.1.S1_at	1/11	6	+	11324821..11326860	hypothetical protein
LOC_Os06g19830	OsAffx.727.1.S1_x_at	1/11	6	+	11324821..11326860	hypothetical protein
LOC_Os06g19840	OsAffx.27722.1.S1_at	11/11	6	+	11330739..11331677	hypothetical protein
LOC_Os06g19854	OsAffx.29246.1.A1_at	7/11	6	+	11335843..11345775	retrotransposon protein, putative, unclassified
LOC_Os06g19854	Os.38764.1.S1_x_at	4/11	6	+	11335843..11345775	retrotransposon protein, putative, unclassified
LOC_Os06g19854	Os.46610.1.S1_x_at	3/11	6	+	11335843..11345775	retrotransposon protein, putative, unclassified
LOC_Os06g19854	Os.10731.1.A1_a_at	2/11	6	+	11335843..11345775	retrotransposon protein, putative, unclassified
LOC_Os06g19854	Os.48015.1.A1_x_at	2/11	6	+	11335843..11345775	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15501.1.S1_at--884--733	1	Chr06:11318655..11318679 (25 bp)	GTGGAGAAGGACAGGGTTCAAAATT	LOC_Os06g19810
OsAffx.15501.1.S1_at--1086--17	1	Chr06:11318677..11318701 (25 bp)	ATTTCGCCGAAACAGGGTCCAGAAT	LOC_Os06g19810
OsAffx.15501.1.S1_at--896--1029	1	Chr06:11318678..11318702 (25 bp)	TTTCGCCGAAACAGGGTCCAGAATT	LOC_Os06g19810
OsAffx.15501.1.S1_at--381--1061	1	Chr06:11318679..11318703 (25 bp)	TTCGCCGAAACAGGGTCCAGAATTT	LOC_Os06g19810
OsAffx.15501.1.S1_at--463--449	1	Chr06:11318682..11318706 (25 bp)	GCCGAAACAGGGTCCAGAATTTCTG	LOC_Os06g19810
OsAffx.15501.1.S1_at--273--211	1	Chr06:11318688..11318712 (25 bp)	ACAGGGTCCAGAATTTCTGAAAATC	LOC_Os06g19810
OsAffx.15501.1.S1_at--425--725	1	Chr06:11318693..11318717 (25 bp)	GTCCAGAATTTCTGAAAATCGGGTT	LOC_Os06g19810
OsAffx.15501.1.S1_at--215--523	1	Chr06:11318698..11318722 (25 bp)	GAATTTCTGAAAATCGGGTTTATCG	LOC_Os06g19810
OsAffx.15501.1.S1_at--665--855	1	Chr06:11318705..11318729 (25 bp)	TGAAAATCGGGTTTATCGGTGGGCA	LOC_Os06g19810
OsAffx.15501.1.S1_at--295--941	1	Chr06:11318711..11318735 (25 bp)	TCGGGTTTATCGGTGGGCACCCAAG	LOC_Os06g19810
OsAffx.15501.1.S1_at--640--1041	1	Chr06:11318717..11318741 (25 bp)	TTATCGGTGGGCACCCAAGAAAACA	LOC_Os06g19810

Target Sequence

GTGGAGAAGGACAGGGTTCAAAATTTCGCCGAAACAGGGTCCAGAATTTCTGAAAATCGGGTTTATCGGTGGGCACCCAA
GAAAACA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis