Browse Element(s) Details


OsAffx.24949.3.S1_x_at

Description tigr:9634.m01920
TID=OsAffx.24949.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1982011/11hypothetical protein
LOC_Os11g026501/11fringe protein, putative
LOC_Os04g498401/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19770OsAffx.27719.1.S1_at11/116+11295648..11295857hypothetical protein
LOC_Os06g19780NANA6+11297169..11298185hypothetical protein
LOC_Os06g19790OsAffx.15500.1.S1_x_at7/116+11302571..11303263hypothetical protein
LOC_Os06g19800OsAffx.4876.1.S1_x_at11/116+11308412..11317283BURP domain containing protein, expressed
LOC_Os06g19800OsAffx.2299.1.S1_s_at1/116+11308412..11317283BURP domain containing protein, expressed
LOC_Os06g19810OsAffx.15501.1.S1_at11/116+11318547..11318771hypothetical protein
LOC_Os06g19820OsAffx.24949.3.S1_x_at11/116+11319632..11321203hypothetical protein
LOC_Os06g19820OsAffx.24949.1.S1_x_at5/116+11319632..11321203hypothetical protein
LOC_Os06g19830Os.45902.1.A1_x_at2/116+11324821..11326860hypothetical protein
LOC_Os06g19830Os.10263.1.S1_at1/116+11324821..11326860hypothetical protein
LOC_Os06g19830OsAffx.727.1.S1_x_at1/116+11324821..11326860hypothetical protein
LOC_Os06g19840OsAffx.27722.1.S1_at11/116+11330739..11331677hypothetical protein
LOC_Os06g19854OsAffx.29246.1.A1_at7/116+11335843..11345775retrotransposon protein, putative, unclassified
LOC_Os06g19854Os.38764.1.S1_x_at4/116+11335843..11345775retrotransposon protein, putative, unclassified
LOC_Os06g19854Os.46610.1.S1_x_at3/116+11335843..11345775retrotransposon protein, putative, unclassified
LOC_Os06g19854Os.10731.1.A1_a_at2/116+11335843..11345775retrotransposon protein, putative, unclassified
LOC_Os06g19854Os.48015.1.A1_x_at2/116+11335843..11345775retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24949.3.S1_x_at--603--6231Chr06:11320230..11320254 (25 bp)
GATGGCGGGCACGGGATAGCGTCGC
LOC_Os06g19820
OsAffx.24949.3.S1_x_at--778--7112Chr06:11320146..11320170 (25 bp)
GTCATGAACTGCAACGCGCCGAGGG
LOC_Os06g19820
OsAffx.24949.3.S1_x_at--940--672Chr11:849772..849796 (25 bp)
ATGACGGCGCCGTATCGGCGGGCGT
LOC_Os11g02650
OsAffx.24949.3.S1_x_at--471--6891Chr06:11320023..11320047 (25 bp)
GTATCGGCGGGCGTGGCACAGCAGT
LOC_Os06g19820
OsAffx.24949.3.S1_x_at--199--5131Chr06:11319919..11320032 (25 bp)
GCACAGCAGTCGATGGAGATGCCCA
LOC_Os06g19820
OsAffx.24949.3.S1_x_at--175--3311Chr06:11319918..11320031 (25 bp)
CACAGCAGTCGATGGAGATGCCCAT
LOC_Os06g19820
OsAffx.24949.3.S1_x_at--474--1891Chr06:11319889..11319913 (25 bp)
ACGTTCCTCAATTGGTACCGCTGTG
LOC_Os06g19820
OsAffx.24949.3.S1_x_at--978--3171Chr06:11319881..11319905 (25 bp)
CAATTGGTACCGCTGTGCCGACTAC
LOC_Os06g19820
OsAffx.24949.3.S1_x_at--343--4271Chr06:11319830..11319854 (25 bp)
CCTGGCGTGCCAACCATGCCAAATG
LOC_Os06g19820
OsAffx.24949.3.S1_x_at--42--8371Chr06:11319827..11319851 (25 bp)
GGCGTGCCAACCATGCCAAATGCCG
LOC_Os06g19820
OsAffx.24949.3.S1_x_at--970--4391Chr06:11319822..11319846 (25 bp)
GCCAACCATGCCAAATGCCGCAGGT
LOC_Os06g19820
Target Sequence 
GATGGCGGGCACGGGATAGCGTCGCGGCCCAACGCCGGCGCCAGCGCCGGCATCGCCCGCCCGCGCGCGATCTCCCCCAC
CGCCGTCATGAACTGCAACGCGCCGAGGGCCGAGGGCCAATGCGGCGGCGACGGCGTCACCGATGGCTGCCATCGAGGCG
GTTCGGGAGAGGCAGCAGAGGAAGGGGAGATCGAGGATGACGGCGCCGTATCGGCGGGCGTGGCACAGCAGTCGATGGAG
ATGCCCATGCGCACGTTCCTCAATTGGTACCGCTGTGCCGACTACACGGCGTACGTCTTCAACACGCGGCCCCTGGCGTG
CCAACCATGCCAAATGCCGCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24949.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis