Browse Element(s) Details


OsAffx.29226.1.S1_at

Description tigr:9636.m01595
TID=OsAffx.29226.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1589011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15870OsAffx.19542.3.S1_x_at2/118+9642076..9646580retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g15880OsAffx.5831.1.S1_at11/118+9659514..9665037NB-ARC domain containing protein
LOC_Os08g15880OsAffx.29724.6.S1_x_at1/118+9659514..9665037NB-ARC domain containing protein
LOC_Os08g15890OsAffx.29226.1.S1_at11/118+9669992..9670865hypothetical protein
LOC_Os08g15900OsAffx.22682.2.S1_at11/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.22682.1.S1_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.15500.1.S1_x_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.13264.1.S1_x_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15910OsAffx.17017.1.S1_at11/118+9684823..9686198hypothetical protein
LOC_Os08g15920OsAffx.29227.1.S1_s_at11/118+9688891..9690586hypothetical protein
LOC_Os08g15920Os.38764.1.S1_x_at4/118+9688891..9690586hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29226.1.S1_at--616--4611Chr08:9670802..9670826 (25 bp)
GCGAGCCCTGACATCTTCAAGGTAA
LOC_Os08g15890
OsAffx.29226.1.S1_at--980--7211Chr08:9670626..9670650 (25 bp)
GTCGAAGATGATAGTTCCGGTCTAA
LOC_Os08g15890
OsAffx.29226.1.S1_at--722--6491Chr08:9670599..9670623 (25 bp)
GATATCCTTGGTCCTGAAGGTGACA
LOC_Os08g15890
OsAffx.29226.1.S1_at--282--651Chr08:9670485..9670509 (25 bp)
ATGCAGCTTGTCATAGGCCGCAGGG
LOC_Os08g15890
OsAffx.29226.1.S1_at--553--2491Chr08:9670460..9670484 (25 bp)
AACATGAGGCTCAAGTCCACACTCT
LOC_Os08g15890
OsAffx.29226.1.S1_at--352--3331Chr08:9670423..9670447 (25 bp)
CACGATGGACCTTCATGTTGCAGAT
LOC_Os08g15890
OsAffx.29226.1.S1_at--286--5531Chr08:9670245..9670415 (25 bp)
GAAACTACCATTTCCAGGAGGGTGA
LOC_Os08g15890
OsAffx.29226.1.S1_at--102--1591Chr08:9670185..9670209 (25 bp)
AGCTCTTCCAACTCAAGGTCATCGT
LOC_Os08g15890
OsAffx.29226.1.S1_at--497--3691Chr08:9670160..9670184 (25 bp)
CTTTGGCAGTGTCTTCGGCATTGAA
LOC_Os08g15890
OsAffx.29226.1.S1_at--12--1891Chr08:9670126..9670150 (25 bp)
ACGATCCTCGTGCTATTTCTTGCTG
LOC_Os08g15890
OsAffx.29226.1.S1_at--1068--10711Chr08:9670107..9670131 (25 bp)
TTGCTGTGCACGGAGAGGCCTTTCA
LOC_Os08g15890
Target Sequence 
GCGAGCCCTGACATCTTCAAGGTAAGGGCGGCCGAAGATGATGTTGTATGCGAAGTTTTAGCTAGTGATGTCGAAGATGA
TAGTTCCGGTCTAAAAGATATCCTTGGTCCTGAAGGTGACAAGCAGCTGAACGTGCTCGAGGGGGATAGTGTGGTTGCAC
GGGGTGATGTCGTGGAACGCCGCGGATGGCTTAAGGCGCCTTGGCCCCACATGCAGCTTGTCATAGGCCGCAGGGAACAT
GAGGCTCAAGTCCACACTCTCATTGATCAATGCACGATGGACCTTCATGTTGCAGATGGTGGAGGAAACTACCATTTCCA
GGAGGGTGAAGACGCCCCCGTCGAGGCAGGTGATAACGTTCTCAAGCTCTTCCAACTCAAGGTCATCGTCTTTGGCAGTG
TCTTCGGCATTGAAGGATGCACGACGATCCTCGTGCTATTTCTTGCTGTGCACGGAGAGGCCTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis