Browse Element(s) Details


OsAffx.22682.1.S1_at

Description gb:NM_184844.1
DB_XREF= gi:34896777
GEN=OSJNBa0015G17.12
TID=OsAffx.22682.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative mutator-like transposase (OSJNBa0015G17.12), mRNA.
PROD=putative mutator-like transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g159001/11transposase related protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15880OsAffx.5831.1.S1_at11/118+9659514..9665037NB-ARC domain containing protein
LOC_Os08g15880OsAffx.29724.6.S1_x_at1/118+9659514..9665037NB-ARC domain containing protein
LOC_Os08g15890OsAffx.29226.1.S1_at11/118+9669992..9670865hypothetical protein
LOC_Os08g15900OsAffx.22682.2.S1_at11/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.22682.1.S1_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.15500.1.S1_x_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.13264.1.S1_x_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15910OsAffx.17017.1.S1_at11/118+9684823..9686198hypothetical protein
LOC_Os08g15920OsAffx.29227.1.S1_s_at11/118+9688891..9690586hypothetical protein
LOC_Os08g15920Os.38764.1.S1_x_at4/118+9688891..9690586hypothetical protein
LOC_Os08g15930OsAffx.5832.1.S1_at11/118+9697179..9697796hypothetical protein
LOC_Os08g15940NANA8+9698456..9699876transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15950OsAffx.5833.1.S1_at10/118+9700957..9701941hypothetical protein
LOC_Os08g15960NANA8+9704610..9704942hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22682.1.S1_at--366--8631Chr03:22412948..22412972 (25 bp)
TGGTGGCATGCCTTGATTGTTATTG
NONE
OsAffx.22682.1.S1_at--269--2171Chr03:22412860..22412884 (25 bp)
ACACCACACATGCTCTAATGCGGAA
NONE
OsAffx.22682.1.S1_at--81--3031Chr03:22412844..22412868 (25 bp)
AATGCGGAAGCATCTGGCAAACATT
NONE
OsAffx.22682.1.S1_at--370--2512Chr08:9682648..9682667 (20 bp)
AACATTTGCAGCTAACTTCGAGGTT
LOC_Os08g15900
OsAffx.22682.1.S1_at--403--10071Chr03:22412773..22412797 (25 bp)
TAGTGCTGAACCTACATTGTCTCCT
NONE
OsAffx.22682.1.S1_at--796--9531Chr03:22412712..22412736 (25 bp)
TATTGGCCTACGTACGACAAAGCTT
NONE
OsAffx.22682.1.S1_at--129--3611Chr03:22412690..22412714 (25 bp)
CTTGGCATGCTAAGCGAGTTGCTAT
NONE
OsAffx.22682.1.S1_at--832--4911Chr03:22412627..22412651 (25 bp)
GCTTGCCTATGCTACCGAATGCTAT
NONE
OsAffx.22682.1.S1_at--489--6091Chr03:22412158..22412182 (25 bp)
GAGTCCCTAGGCATGTATTTGGTCG
NONE
OsAffx.22682.1.S1_at--401--10531Chr03:22412045..22412069 (25 bp)
TTCAGAGGCACATTGCTCACAGTAA
NONE
OsAffx.22682.1.S1_at--160--6471Chr03:22412012..22412036 (25 bp)
GATACATGGTTACACCTTGTTCTTT
NONE
Target Sequence 
TGGTGGCATGCCTTGATTGTTATTGTGAATGGCAGATTCGTACAAGAAAGAGGGCGGGTGATAGGTGGAGGATAACTAGT
GTAGGCAAACACCACACATGCTCTAATGCGGAAGCATCTGGCAAACATTTGCAGCTAACTTCGAGGTTTATAGGTAATAG
ATTACAGACATTTGTTAGTGCTGAACCTACATTGTCTCCTGTAGCTATTGTAGAGGCAGTTGAGCACATATGGCACTATT
GGCCTACGTACGACAAAGCTTGGCATGCTAAGCGAGTTGCTATGAAGGTCATATGGGGAGATTGGGACGAGGCATACCTT
CGCTTGCCTATGCTACCGAATGCTATCAAAAGGGAGAAATCAAGAATGGTGGATGGAGTCCCTAGGCATGTATTTGGTCG
TGCTTCATGGATATTTTGGCAGTCAGTGGAGGCATTCAAGCATTTGAGGCCAGTGTTAGCAATTGATGGGACCTTCTTGA
CCGGTAAATTCAGAGGCACATTGCTCACAGTAATAGGGATTGATACATGGTTACACCTTGTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis