Browse Element(s) Details


OsAffx.5833.1.S1_at

Description tigr:9636.m01601
TID=OsAffx.5833.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1595010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15900OsAffx.22682.2.S1_at11/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.22682.1.S1_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.15500.1.S1_x_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15900OsAffx.13264.1.S1_x_at1/118+9680143..9683670transposase related protein, putative
LOC_Os08g15910OsAffx.17017.1.S1_at11/118+9684823..9686198hypothetical protein
LOC_Os08g15920OsAffx.29227.1.S1_s_at11/118+9688891..9690586hypothetical protein
LOC_Os08g15920Os.38764.1.S1_x_at4/118+9688891..9690586hypothetical protein
LOC_Os08g15930OsAffx.5832.1.S1_at11/118+9697179..9697796hypothetical protein
LOC_Os08g15940NANA8+9698456..9699876transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15950OsAffx.5833.1.S1_at10/118+9700957..9701941hypothetical protein
LOC_Os08g15960NANA8+9704610..9704942hypothetical protein
LOC_Os08g15970NANA8+9718281..9719698hypothetical protein
LOC_Os08g15980OsAffx.7697.2.S1_x_at11/118+9723224..9724306hypothetical protein
LOC_Os08g15980OsAffx.7697.1.S1_at2/118+9723224..9724306hypothetical protein
LOC_Os08g15980OsAffx.18764.1.S1_at1/118+9723224..9724306hypothetical protein
LOC_Os08g15980OsAffx.18764.3.S1_at1/118+9723224..9724306hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5833.1.S1_at--780--2351Chr08:9701007..9701031 (25 bp)
AAAGCTGAGAACTCCTTTACCGTCA
LOC_Os08g15950
OsAffx.5833.1.S1_at--95--10571Chr08:9701034..9701449 (25 bp)
TTCTTCAACAGCATCGATTCCACGA
LOC_Os08g15950
OsAffx.5833.1.S1_at--271--9391NONE
TCGATTCCACGATATCCAAGCTCTA
NONE
OsAffx.5833.1.S1_at--206--10111Chr08:9701482..9701506 (25 bp)
TATGATTACTCCAGCAGTCAACTTG
LOC_Os08g15950
OsAffx.5833.1.S1_at--408--6071Chr08:9701516..9701540 (25 bp)
GAGTTCAAATACCAACGAGCCATGC
LOC_Os08g15950
OsAffx.5833.1.S1_at--145--8971Chr08:9701577..9701601 (25 bp)
TGACAACAGTTGAGGCTAGCCGACA
LOC_Os08g15950
OsAffx.5833.1.S1_at--438--8471Chr08:9701644..9701668 (25 bp)
TGGCCCTGACTCAACTCAGCAAAGA
LOC_Os08g15950
OsAffx.5833.1.S1_at--927--2491Chr08:9701685..9701709 (25 bp)
AACAGGAAGCTGATCTCTTGGCACA
LOC_Os08g15950
OsAffx.5833.1.S1_at--91--1391Chr08:9701718..9701742 (25 bp)
AGACCAGGCAAGACATATCATCAGA
LOC_Os08g15950
OsAffx.5833.1.S1_at--379--8291Chr08:9701800..9701824 (25 bp)
GGCATTGGCCAAACATCTTGCAGGA
LOC_Os08g15950
OsAffx.5833.1.S1_at--935--6071Chr08:9701823..9701847 (25 bp)
GAGTAACCAAAACCCTGAAGCCAAT
LOC_Os08g15950
Target Sequence 
AAAGCTGAGAACTCCTTTACCGTCATCTTCTTCAACAGCATCGATTCCACGATATCCAAGCTCTACTCTAGATGAATTAG
CTAATATGATTACTCCAGCAGTCAACTTGGAGCAACATGAGTTCAAATACCAACGAGCCATGCAAAGACTTGCTGATTGG
TTGGAGAGACAAGCCATGGTGACAACAGTTGAGGCTAGCCGACAGCAAATCATTGAAGATAAAATCAAGCTTGATGCATT
GGCTGCTGGCCCTGACTCAACTCAGCAAAGACTTAAAGAGCTTGCAAAACAGGAAGCTGATCTCTTGGCACAATTGGAGA
AGACCAGGCAAGACATATCATCAGAAGAACAAAAACTAGCCGATCTCCCAAGAGCAATAGAAGAACAAATGGCCAAATTA
AAGGCATTGGCCAAACATCTTGCAGGAGTAACCAAAACCCTGAAGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5833.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis