Browse Element(s) Details


OsAffx.7697.1.S1_at

Description tigr:9640.m02426
TID=OsAffx.7697.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g254096/11hypothetical protein
LOC_Os08g159802/11hypothetical protein
LOC_Os04g326401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25370NANA12+14631795..14634026hypothetical protein
LOC_Os12g25380Os.27088.1.A1_x_at1/1112+14638715..14643516retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25380Os.46012.2.S1_x_at1/1112+14638715..14643516retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25390Os.26886.3.S1_x_at8/1112+14645703..14648651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25400Os.52061.1.S1_at11/1112+14649874..14650309expressed protein
LOC_Os12g25409OsAffx.7697.1.S1_at6/1112+14657501..14658189hypothetical protein
LOC_Os12g25409OsAffx.18764.3.S1_s_at2/1112+14657501..14658189hypothetical protein
LOC_Os12g25409OsAffx.18764.1.S1_at1/1112+14657501..14658189hypothetical protein
LOC_Os12g25409OsAffx.7697.2.S1_x_at1/1112+14657501..14658189hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7697.1.S1_at--612--8751Chr12:14657561..14657585 (25 bp)
TGTAGCACAGTAGCAGTTTCATGGA
LOC_Os12g25409
OsAffx.7697.1.S1_at--109--6952Chr12:14657570..14657594 (25 bp)
GTAGCAGTTTCATGGAGTTCATCTA
LOC_Os12g25409
OsAffx.7697.1.S1_at--131--9634Chr12:14657579..14657603 (25 bp)
TCATGGAGTTCATCTATGGGTGGGT
LOC_Os12g25409
OsAffx.7697.1.S1_at--548--3431Chr12:14657610..14657849 (25 bp)
CAGTAATATGTGTGGATTTTCCCTT
LOC_Os12g25409
OsAffx.7697.1.S1_at--88--7611Chr12:14657899..14657973 (25 bp)
GGGAAGAAGGTTGCCATAGAACTAT
LOC_Os12g25409
OsAffx.7697.1.S1_at--526--10611Chr12:14658020..14658042 (23 bp)
TTCGCATTTGGATATTCGTACTTTA
LOC_Os12g25409
OsAffx.7697.1.S1_at--181--111NONE
ATTCGTACTTTAGGTCATCTTTCAC
NONE
OsAffx.7697.1.S1_at--415--1031Chr12:14658991..14659015 (25 bp)
AGGTCATCTTTCACAATCTTGTCCA
NONE
OsAffx.7697.1.S1_at--334--3071Chr12:14659005..14659029 (25 bp)
AATCTTGTCCAGATCTCTGTGGTTC
NONE
OsAffx.7697.1.S1_at--1152--7251Chr12:14659011..14659035 (25 bp)
GTCCAGATCTCTGTGGTTCAGCCAA
NONE
OsAffx.7697.1.S1_at--941--6411Chr12:14659016..14659040 (25 bp)
GATCTCTGTGGTTCAGCCAATGCAG
NONE
Target Sequence 
TGTAGCACAGTAGCAGTTTCATGGAGTTCATCTATGGGTGGGTGGTGGACAGTAATATGTGTGGATTTTCCCTTGCCAAT
AGCATTGGTGGAGATAAGTGGAAGGTGCAAAACTAATGACCATGGGAAGAAGGTTGCCATAGAACTATTTGAGCTTCTTG
GTATTAAATCTGGGAGGTACTTGTATGAGCTAGATTCGCATTTGGATATTCGTACTTTAGGTCATCTTTCACAATCTTGT
CCAGATCTCTGTGGTTCAGCCAATGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7697.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis