Browse Element(s) Details


Os.52061.1.S1_at

Description gb:AK064643.1
DB_XREF= gi:32974661
TID=Os.52061.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-B12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-B12, full insert sequence.
FL= gb:AK064643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2540011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25350OsAffx.31876.1.S1_at11/1112+14624571..14627703hypothetical protein
LOC_Os12g25360OsAffx.7696.1.S1_at11/1112+14629585..14631120hypothetical protein
LOC_Os12g25370NANA12+14631795..14634026hypothetical protein
LOC_Os12g25380Os.27088.1.A1_x_at1/1112+14638715..14643516retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25380Os.46012.2.S1_x_at1/1112+14638715..14643516retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25390Os.26886.3.S1_x_at8/1112+14645703..14648651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25400Os.52061.1.S1_at11/1112+14649874..14650309expressed protein
LOC_Os12g25409OsAffx.7697.1.S1_at6/1112+14657501..14658189hypothetical protein
LOC_Os12g25409OsAffx.18764.3.S1_s_at2/1112+14657501..14658189hypothetical protein
LOC_Os12g25409OsAffx.18764.1.S1_at1/1112+14657501..14658189hypothetical protein
LOC_Os12g25409OsAffx.7697.2.S1_x_at1/1112+14657501..14658189hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52061.1.S1_at--941--551Chr12:14649963..14649987 (25 bp)
ATCCTGTGCTTCTTTGGCCGGATCT
LOC_Os12g25400
Os.52061.1.S1_at--668--10231Chr12:14649975..14649999 (25 bp)
TTTGGCCGGATCTAGCCTCCCATGG
LOC_Os12g25400
Os.52061.1.S1_at--572--4491Chr12:14650009..14650033 (25 bp)
GCCGGTGTGGTCTGTGCCTGGTGAA
LOC_Os12g25400
Os.52061.1.S1_at--194--4751Chr12:14650140..14650164 (25 bp)
GCTGATCTAGGGTTGGTGTGTTTTT
LOC_Os12g25400
Os.52061.1.S1_at--347--10373Chr12:14650163..14650187 (25 bp)
TTTTTATCTCTTTCATGTTCTCTCG
LOC_Os12g25400
Os.52061.1.S1_at--1093--451Chr12:14650168..14650192 (25 bp)
ATCTCTTTCATGTTCTCTCGTTTAA
LOC_Os12g25400
Os.52061.1.S1_at--152--6731Chr12:14650179..14650203 (25 bp)
GTTCTCTCGTTTAATTTGTCTCATA
LOC_Os12g25400
Os.52061.1.S1_at--339--8731Chr12:14650195..14650219 (25 bp)
TGTCTCATATGTGTACCGAGAATGA
LOC_Os12g25400
Os.52061.1.S1_at--140--3011Chr12:14650215..14650239 (25 bp)
AATGAATTGTTGTTATTGACGTGAT
LOC_Os12g25400
Os.52061.1.S1_at--890--6511Chr12:14650258..14650282 (25 bp)
GATATTGATGTGTACCGAGAAGGAA
LOC_Os12g25400
Os.52061.1.S1_at--322--5291Chr12:14650276..14650300 (25 bp)
GAAGGAATTGTTGTTATTGACGTGA
LOC_Os12g25400
Target Sequence 
ATCCTGTGCTTCTTTGGCCGGATCTAGCCTCCCATGGCCGGCTCTGGCCGGTGTGGTCTGTGCCTGGTGAAGGGGAGGCG
GCAAGCTCCCGCGGCCACGCCCTCCCCTCCACCAGATCCGGTGGCCGGCCTCCCGCGGCCGGCTCCTGTGGGCGACGGCG
CTGGGGTCGGTTCGAGTGCTGATCTAGGGTTGGTGTGTTTTTTTTATCTCTTTCATGTTCTCTCGTTTAATTTGTCTCAT
ATGTGTACCGAGAATGAATTGTTGTTATTGACGTGATTTTGATTTTGGATGTGGGGATATTGATGTGTACCGAGAAGGAA
TTGTTGTTATTGACGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52061.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis