Browse Element(s) Details


OsAffx.7696.1.S1_at

Description tigr:9640.m02421
TID=OsAffx.7696.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2536011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25330Os.46055.2.S1_x_at4/1112+14605268..14608980transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25330Os.10827.1.S1_x_at3/1112+14605268..14608980transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25340OsAffx.25936.2.S1_x_at6/1112+14612364..14615378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25340OsAffx.25936.1.S1_s_at4/1112+14612364..14615378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25340OsAffx.25936.7.S1_s_at3/1112+14612364..14615378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25340OsAffx.25936.5.S1_x_at1/1112+14612364..14615378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25350OsAffx.31876.1.S1_at11/1112+14624571..14627703hypothetical protein
LOC_Os12g25360OsAffx.7696.1.S1_at11/1112+14629585..14631120hypothetical protein
LOC_Os12g25370NANA12+14631795..14634026hypothetical protein
LOC_Os12g25380Os.27088.1.A1_x_at1/1112+14638715..14643516retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25380Os.46012.2.S1_x_at1/1112+14638715..14643516retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25390Os.26886.3.S1_x_at8/1112+14645703..14648651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25400Os.52061.1.S1_at11/1112+14649874..14650309expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7696.1.S1_at--1153--7651Chr12:14629615..14629639 (25 bp)
GGGTTGGCATCAGCTACTTGCGTCG
LOC_Os12g25360
OsAffx.7696.1.S1_at--248--9671Chr12:14629624..14629648 (25 bp)
TCAGCTACTTGCGTCGGCTCAGATG
LOC_Os12g25360
OsAffx.7696.1.S1_at--1009--2051Chr12:14629630..14629654 (25 bp)
ACTTGCGTCGGCTCAGATGGTGTTA
LOC_Os12g25360
OsAffx.7696.1.S1_at--214--4831Chr12:14629640..14629902 (25 bp)
GCTCAGATGGTGTTAGACCGGCAGT
LOC_Os12g25360
OsAffx.7696.1.S1_at--230--4071Chr12:14630807..14630831 (25 bp)
CGAGGAAAGCGGTGACGTGCTCGCC
LOC_Os12g25360
OsAffx.7696.1.S1_at--159--10651Chr12:14630832..14630856 (25 bp)
TTCGCCATGTCGAACCGCTCGACGA
LOC_Os12g25360
OsAffx.7696.1.S1_at--698--10871Chr12:14631031..14631055 (25 bp)
TTGGACACCAGCACACGAGGCAAGA
LOC_Os12g25360
OsAffx.7696.1.S1_at--592--1871Chr12:14631045..14631069 (25 bp)
ACGAGGCAAGATGCAGCCGCGAGCT
LOC_Os12g25360
OsAffx.7696.1.S1_at--807--1291Chr12:14631053..14631077 (25 bp)
AGATGCAGCCGCGAGCTCCTATAGA
LOC_Os12g25360
OsAffx.7696.1.S1_at--615--4611Chr12:14631063..14631087 (25 bp)
GCGAGCTCCTATAGACTTCATCGGG
LOC_Os12g25360
OsAffx.7696.1.S1_at--254--1591Chr12:14631066..14631090 (25 bp)
AGCTCCTATAGACTTCATCGGGACG
LOC_Os12g25360
Target Sequence 
GGGTTGGCATCAGCTACTTGCGTCGGCTCAGATGGTGTTAGACCGGCAGTGGCGGTGATACGGCGATGCGACGACGCCGG
CGAAGAGGAGGCGGCTGTTGGCCGACGCGACGACGCCGACGAAGAGGCGGCGGCTGTGGCGAAGGGGCGAGGCGGCGGCG
GCGGCGGCAAAGAGGTGAGGTGGCGGAGGCGGCGGCGAAGGGGTGAGGACGCGGCGGCGAAGGGATCCAGGGAAGAAGCC
GTGAAAGGCGAGGAAAGCGGTGACGTGCTCGCCTTCGCCATGTCGAACCGCTCGACGACGCCGCGGCCCTTGGACACCAG
CACACGAGGCAAGATGCAGCCGCGAGCTCCTATAGACTTCATCGGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis