Browse Element(s) Details


OsAffx.31876.1.S1_at

Description tigr:9640.m02420
TID=OsAffx.31876.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2535011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25330Os.46055.2.S1_x_at4/1112+14605268..14608980transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25330Os.10827.1.S1_x_at3/1112+14605268..14608980transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25340OsAffx.25936.2.S1_x_at6/1112+14612364..14615378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25340OsAffx.25936.1.S1_s_at4/1112+14612364..14615378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25340OsAffx.25936.7.S1_s_at3/1112+14612364..14615378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25340OsAffx.25936.5.S1_x_at1/1112+14612364..14615378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25350OsAffx.31876.1.S1_at11/1112+14624571..14627703hypothetical protein
LOC_Os12g25360OsAffx.7696.1.S1_at11/1112+14629585..14631120hypothetical protein
LOC_Os12g25370NANA12+14631795..14634026hypothetical protein
LOC_Os12g25380Os.27088.1.A1_x_at1/1112+14638715..14643516retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25380Os.46012.2.S1_x_at1/1112+14638715..14643516retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25390Os.26886.3.S1_x_at8/1112+14645703..14648651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25400Os.52061.1.S1_at11/1112+14649874..14650309expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31876.1.S1_at--817--3591Chr12:14627181..14627205 (25 bp)
CATTGCCGTGCAAGTGAGATGGAAG
LOC_Os12g25350
OsAffx.31876.1.S1_at--392--6031Chr12:14627196..14627220 (25 bp)
GAGATGGAAGCCTGCGACTGCCGCC
LOC_Os12g25350
OsAffx.31876.1.S1_at--586--3751Chr12:14627224..14627248 (25 bp)
CTCACCGCACAAGGGAGAGGGAAGT
LOC_Os12g25350
OsAffx.31876.1.S1_at--902--651Chr12:14627315..14627339 (25 bp)
ATGCACTTCCTGACAGAACTGCCGC
LOC_Os12g25350
OsAffx.31876.1.S1_at--555--5471Chr12:14627330..14627354 (25 bp)
GAACTGCCGCGCACGCTGGAATCGA
LOC_Os12g25350
OsAffx.31876.1.S1_at--943--1831Chr12:14627342..14627366 (25 bp)
ACGCTGGAATCGACACCATCGCGGC
LOC_Os12g25350
OsAffx.31876.1.S1_at--820--4451Chr12:14627438..14627462 (25 bp)
GCCTCAACACAACTGAGCTCAGCGA
LOC_Os12g25350
OsAffx.31876.1.S1_at--230--3851Chr12:14627450..14627474 (25 bp)
CTGAGCTCAGCGAAGGAATGGGCTT
LOC_Os12g25350
OsAffx.31876.1.S1_at--684--2651Chr12:14627553..14627577 (25 bp)
AAGCCATGGGTGTCATCTAACGGGT
LOC_Os12g25350
OsAffx.31876.1.S1_at--251--811Chr12:14627558..14627582 (25 bp)
ATGGGTGTCATCTAACGGGTGTCAA
LOC_Os12g25350
OsAffx.31876.1.S1_at--1157--6114Chr12:14627617..14627641 (25 bp)
GAGGTGGCAAAAATGCAAACCCTAA
LOC_Os12g25350
Target Sequence 
CATTGCCGTGCAAGTGAGATGGAAGCCTGCGACTGCCGCCTACCTCACCGCACAAGGGAGAGGGAAGTGTAGCCGCCGCT
ACACCGGAGACCTGTCGTCGACTCGCGCTCAACTGCTGCCGCGGCCATCGCCGCATGCACTTCCTGACAGAACTGCCGCG
CACGCTGGAATCGACACCATCGCGGCGGTTCCCGCCCTCGCCGCGCATGTCGGAACCGCCACCGTCGCCGAGCACACCGA
AGCCGTTGCCGGTCGCCGCCTCAACACAACTGAGCTCAGCGAAGGAATGGGCTTGGGTCCTTATCCATTCACTCAAGGGT
ACAATAGTAAATTAAATCCTTTTTCTGTTTCAATTTGTATTTTTTTAACCCAAAGCCATGGGTGTCATCTAACGGGTGTC
AAGAGTGAGGGCAAACGGCGTGTTCGTTTTCAAAAAGAGGTGGCAAAAATGCAAACCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31876.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis