Browse Element(s) Details


OsAffx.18764.3.S1_s_at

Description tigr:9632.m03116
TID=OsAffx.18764.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3264011/11hypothetical protein
LOC_Os12g254092/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32620Os.9523.1.S1_at11/114+19464268..19466627AP2 domain containing protein, expressed
LOC_Os04g32630OsAffx.14099.1.S1_at7/114+19471379..19473560hypothetical protein
LOC_Os04g32640OsAffx.18764.3.S1_s_at11/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.18764.3.S1_at11/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.18764.1.S1_at3/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.7697.2.S1_x_at2/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.7697.1.S1_at1/114+19482391..19483598hypothetical protein
LOC_Os04g32650Os.5857.1.S1_at11/114+19489656..19494787Glycyl-tRNA synthetase, putative, expressed
LOC_Os04g32660Os.9380.2.S1_at11/114+19497875..19500621Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed
LOC_Os04g32670Os.280.1.S1_at11/114+19503155..19507279exostosin family protein, putative, expressed
LOC_Os04g32670Os.280.1.S2_at11/114+19503155..19507279exostosin family protein, putative, expressed
LOC_Os04g32680NANA4+19506015..19506942Pollen-specific protein C13 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18764.3.S1_s_at--884--4334Chr12:14657895..14657919 (25 bp)
CCATGGGAAGAAGGTCTGACTATCT
LOC_Os12g25409
OsAffx.18764.3.S1_s_at--202--8194Chr12:14657900..14657923 (24 bp)
GGAAGAAGGTCTGACTATCTCATTG
LOC_Os12g25409
OsAffx.18764.3.S1_s_at--21--10173Chr01:10337097..10337121 (25 bp)
TATCTCATTGTCTTATTTGACCTGT
NONE
OsAffx.18764.3.S1_s_at--281--10813Chr01:10337104..10337128 (25 bp)
TTGTCTTATTTGACCTGTATTTCAG
NONE
OsAffx.18764.3.S1_s_at--96--213Chr01:10337111..10337135 (25 bp)
ATTTGACCTGTATTTCAGTATGCGT
NONE
OsAffx.18764.3.S1_s_at--827--4273Chr01:10337117..10337141 (25 bp)
CCTGTATTTCAGTATGCGTTTAGCT
NONE
OsAffx.18764.3.S1_s_at--100--6893Chr01:10337120..10337144 (25 bp)
GTATTTCAGTATGCGTTTAGCTTCT
NONE
OsAffx.18764.3.S1_s_at--659--10533Chr01:10337124..10337148 (25 bp)
TTCAGTATGCGTTTAGCTTCTTGGC
NONE
OsAffx.18764.3.S1_s_at--323--6913Chr01:10337128..10337152 (25 bp)
GTATGCGTTTAGCTTCTTGGCAATC
NONE
OsAffx.18764.3.S1_s_at--2--4913Chr01:10337139..10337163 (25 bp)
GCTTCTTGGCAATCAATTGTGGATG
NONE
OsAffx.18764.3.S1_s_at--642--9593Chr01:10337142..10337166 (25 bp)
TCTTGGCAATCAATTGTGGATGCAA
NONE
Target Sequence 
CCATGGGAAGAAGGTCTGACTATCTCATTGTCTTATTTGACCTGTATTTCAGTATGCGTTTAGCTTCTTGGCAATCAATT
GTGGATGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18764.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis