Browse Element(s) Details


Os.9523.1.S1_at

Description gb:AK101501.1
DB_XREF= gi:32986710
TID=Os.9523.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9523 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044C14, full insert sequence.
FL= gb:AK101501.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3262011/11AP2 domain containing protein, expressed
LOC_Os05g167801/11retrotransposon protein, putative, unclassified
LOC_Os10g179001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g273201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32600OsAffx.26289.1.S1_at10/114+19439893..19442461expressed protein
LOC_Os04g32610OsAffx.27622.1.S1_x_at9/114+19453401..19454741expressed protein
LOC_Os04g32610OsAffx.27622.2.S1_at1/114+19453401..19454741expressed protein
LOC_Os04g32620Os.9523.1.S1_at11/114+19464268..19466627AP2 domain containing protein, expressed
LOC_Os04g32630OsAffx.14099.1.S1_at7/114+19471379..19473560hypothetical protein
LOC_Os04g32640OsAffx.18764.3.S1_s_at11/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.18764.3.S1_at11/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.18764.1.S1_at3/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.7697.2.S1_x_at2/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.7697.1.S1_at1/114+19482391..19483598hypothetical protein
LOC_Os04g32650Os.5857.1.S1_at11/114+19489656..19494787Glycyl-tRNA synthetase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9523.1.S1_at--392--5311Chr04:19466056..19466080 (25 bp)
GAAGGATTCGTCGTCGTGACGTCAC
LOC_Os04g32620
Os.9523.1.S1_at--739--39914Chr04:19466070..19466094 (25 bp)
CGTGACGTCACTGGATGGATCGATC
LOC_Os04g32620
Os.9523.1.S1_at--1036--511Chr04:19466088..19466112 (25 bp)
ATCGATCGATGCATGAATATGCCAT
LOC_Os04g32620
Os.9523.1.S1_at--837--10611Chr04:19466168..19466192 (25 bp)
TTCGGCCTCGGCACGTGGACAGAAA
LOC_Os04g32620
Os.9523.1.S1_at--951--5271Chr04:19466218..19466242 (25 bp)
GAATGTTTAGCTGATCTGCTCTTTA
LOC_Os04g32620
Os.9523.1.S1_at--347--9091Chr04:19466234..19466258 (25 bp)
TGCTCTTTACTCTGCACGATCGAGG
LOC_Os04g32620
Os.9523.1.S1_at--623--10311Chr04:19466239..19466263 (25 bp)
TTTACTCTGCACGATCGAGGAGATG
LOC_Os04g32620
Os.9523.1.S1_at--440--5671Chr04:19466341..19466365 (25 bp)
GACATTAATTTTTCTTTTGATCACC
LOC_Os04g32620
Os.9523.1.S1_at--183--3711Chr04:19466440..19466464 (25 bp)
CTAGGTTAATTAGCTGGTGATTTTT
LOC_Os04g32620
Os.9523.1.S1_at--11--10311Chr04:19466474..19466498 (25 bp)
TTTCCCTCCTTTTGTTCAAGTGTGA
LOC_Os04g32620
Os.9523.1.S1_at--512--8691Chr04:19466505..19466529 (25 bp)
TGTGCAAAATTAGTCCAAGTAAAGC
LOC_Os04g32620
Target Sequence 
GAAGGATTCGTCGTCGTGACGTCACTGGATGGATCGATCGATGCATGAATATGCCATGCATTTGAGAGGAAGAGGTCAAG
TTTTTTTTTAAGCAATGGAAATGGATTACATCTTCGGCCTCGGCACGTGGACAGAAAGAGATCAAGTGATATGGATCGAG
AAGAATGTTTAGCTGATCTGCTCTTTACTCTGCACGATCGAGGAGATGAAAATGCATGCAATATGCATGGAGGGGTAAGT
GTTAAGTGGTTAATTGGTGATTTTTGCGGGTTAATTAATTACATGGACATTAATTTTTCTTTTGATCACCTTTTGTTTAT
TTTTTCTCTGAAAACTATCTTCTTTTGTTCATTTTTATTTTCTTGGAGGTACTTAATTAATTAGCTAGGTTAATTAGCTG
GTGATTTTTAGTTTGTTGTTTCCCTCCTTTTGTTCAAGTGTGAACTAATTGTGCAAAATTAGTCCAAGTAAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9523.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis