Browse Element(s) Details


OsAffx.7697.2.S1_x_at

Description tigr:9636.m01604
TID=OsAffx.7697.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1598011/11hypothetical protein
LOC_Os04g326402/11hypothetical protein
LOC_Os12g254091/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15940NANA8+9698456..9699876transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g15950OsAffx.5833.1.S1_at10/118+9700957..9701941hypothetical protein
LOC_Os08g15960NANA8+9704610..9704942hypothetical protein
LOC_Os08g15970NANA8+9718281..9719698hypothetical protein
LOC_Os08g15980OsAffx.7697.2.S1_x_at11/118+9723224..9724306hypothetical protein
LOC_Os08g15980OsAffx.7697.1.S1_at2/118+9723224..9724306hypothetical protein
LOC_Os08g15980OsAffx.18764.1.S1_at1/118+9723224..9724306hypothetical protein
LOC_Os08g15980OsAffx.18764.3.S1_at1/118+9723224..9724306hypothetical protein
LOC_Os08g15990NANA8+9733162..9736373hypothetical protein
LOC_Os08g16000Os.52731.1.S1_at1/118+9740606..9747593retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7697.2.S1_x_at--37--5971Chr08:9723749..9723769 (21 bp)
GAGAAGGATGCCATAGAACTGTTTG
LOC_Os08g15980
OsAffx.7697.2.S1_x_at--493--3631Chr08:9723722..9723746 (25 bp)
CTTCTTGGTACTAAATCTGGGAGGT
LOC_Os08g15980
OsAffx.7697.2.S1_x_at--1126--7014Chr12:14658002..14658026 (25 bp)
GTACTTGTATGAGCTAGATTCGCAT
LOC_Os12g25409
OsAffx.7697.2.S1_x_at--527--10613Chr01:10337222..10337242 (21 bp)
TTCGCATTTGGATATCCGTACTTAC
NONE
OsAffx.7697.2.S1_x_at--192--6511Chr08:9723265..9723695 (25 bp)
GATATCCGTACTTACATGAAGGCTG
LOC_Os08g15980
OsAffx.7697.2.S1_x_at--227--251Chr08:9723264..9723694 (25 bp)
ATATCCGTACTTACATGAAGGCTGG
LOC_Os08g15980
OsAffx.7697.2.S1_x_at--791--10131Chr08:9723263..9723693 (25 bp)
TATCCGTACTTACATGAAGGCTGGT
LOC_Os08g15980
OsAffx.7697.2.S1_x_at--759--551Chr08:9723262..9723692 (25 bp)
ATCCGTACTTACATGAAGGCTGGTC
LOC_Os08g15980
OsAffx.7697.2.S1_x_at--926--4012Chr12:14658036..14658466 (25 bp)
CGTACTTACATGAAGGCTGGTCCAG
NONE
OsAffx.7697.2.S1_x_at--484--9893Chr01:10337625..10337644 (20 bp)
TACTTACATGAAGGCTGGTCCAGAT
NONE
OsAffx.7697.2.S1_x_at--548--3653Chr01:10337625..10337646 (22 bp)
CTTACATGAAGGCTGGTCCAGATAG
NONE
Target Sequence 
GAGAAGGATGCCATAGAACTGTTTGAGCTTCTTGGTACTAAATCTGGGAGGTACTTGTATGAGCTAGATTCGCATTTGGA
TATCCGTACTTACATGAAGGCTGGTCCAGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7697.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis