Browse Element(s) Details


OsAffx.18764.3.S1_at

Description tigr:9632.m03116
TID=OsAffx.18764.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3264011/11hypothetical protein
LOC_Os08g159801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32620Os.9523.1.S1_at11/114+19464268..19466627AP2 domain containing protein, expressed
LOC_Os04g32630OsAffx.14099.1.S1_at7/114+19471379..19473560hypothetical protein
LOC_Os04g32640OsAffx.18764.3.S1_s_at11/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.18764.3.S1_at11/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.18764.1.S1_at3/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.7697.2.S1_x_at2/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.7697.1.S1_at1/114+19482391..19483598hypothetical protein
LOC_Os04g32650Os.5857.1.S1_at11/114+19489656..19494787Glycyl-tRNA synthetase, putative, expressed
LOC_Os04g32660Os.9380.2.S1_at11/114+19497875..19500621Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed
LOC_Os04g32670Os.280.1.S1_at11/114+19503155..19507279exostosin family protein, putative, expressed
LOC_Os04g32670Os.280.1.S2_at11/114+19503155..19507279exostosin family protein, putative, expressed
LOC_Os04g32680NANA4+19506015..19506942Pollen-specific protein C13 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18764.3.S1_at--945--6571Chr04:19482480..19482848 (25 bp)
GATTCGTATTTGGATATCCTGGGGA
LOC_Os04g32640
OsAffx.18764.3.S1_at--106--7632Chr11:5113223..5113247 (25 bp)
GGGAAAATTGCTCTTACACTCTCTA
NONE
OsAffx.18764.3.S1_at--326--8173Chr01:10337587..10337610 (24 bp)
GGAAAATTGCTCTTACACTCTCTAA
NONE
OsAffx.18764.3.S1_at--606--5513Chr01:10337587..10337611 (25 bp)
GAAAATTGCTCTTACACTCTCTAAC
NONE
OsAffx.18764.3.S1_at--733--2453Chr01:10337588..10337612 (25 bp)
AAAATTGCTCTTACACTCTCTAACA
NONE
OsAffx.18764.3.S1_at--1121--2233Chr01:10337589..10337613 (25 bp)
AAATTGCTCTTACACTCTCTAACAT
NONE
OsAffx.18764.3.S1_at--933--3153Chr01:10337590..10337614 (25 bp)
AATTGCTCTTACACTCTCTAACATG
NONE
OsAffx.18764.3.S1_at--591--73Chr01:10337591..10337615 (25 bp)
ATTGCTCTTACACTCTCTAACATGC
NONE
OsAffx.18764.3.S1_at--870--9093Chr01:10337593..10337617 (25 bp)
TGCTCTTACACTCTCTAACATGCTT
NONE
OsAffx.18764.3.S1_at--987--4813Chr01:10337594..10337618 (25 bp)
GCTCTTACACTCTCTAACATGCTTT
NONE
OsAffx.18764.3.S1_at--302--3693Chr01:10337615..10337639 (25 bp)
CTTTGTGAAGACATGAAGGCTGGTC
NONE
Target Sequence 
GATTCGTATTTGGATATCCTGGGGAAAATTGCTCTTACACTCTCTAACATGCTTTGTGAAGACATGAAGGCTGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18764.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis