Browse Element(s) Details


OsAffx.14099.1.S1_at

Description tigr:9632.m03115
TID=OsAffx.14099.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g326307/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32610OsAffx.27622.1.S1_x_at9/114+19453401..19454741expressed protein
LOC_Os04g32610OsAffx.27622.2.S1_at1/114+19453401..19454741expressed protein
LOC_Os04g32620Os.9523.1.S1_at11/114+19464268..19466627AP2 domain containing protein, expressed
LOC_Os04g32630OsAffx.14099.1.S1_at7/114+19471379..19473560hypothetical protein
LOC_Os04g32640OsAffx.18764.3.S1_s_at11/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.18764.3.S1_at11/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.18764.1.S1_at3/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.7697.2.S1_x_at2/114+19482391..19483598hypothetical protein
LOC_Os04g32640OsAffx.7697.1.S1_at1/114+19482391..19483598hypothetical protein
LOC_Os04g32650Os.5857.1.S1_at11/114+19489656..19494787Glycyl-tRNA synthetase, putative, expressed
LOC_Os04g32660Os.9380.2.S1_at11/114+19497875..19500621Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14099.1.S1_at--200--5451Chr04:19471415..19471627 (25 bp)
GAACTCATAAAAGAGGAGTTCCCAA
LOC_Os04g32630
OsAffx.14099.1.S1_at--779--4271Chr04:19471630..19471654 (25 bp)
CCTTCTCCCAAATACAACCTTATTG
LOC_Os04g32630
OsAffx.14099.1.S1_at--396--3651Chr04:19471631..19471655 (25 bp)
CTTCTCCCAAATACAACCTTATTGT
LOC_Os04g32630
OsAffx.14099.1.S1_at--173--9271Chr04:19471635..19471659 (25 bp)
TCCCAAATACAACCTTATTGTACTG
LOC_Os04g32630
OsAffx.14099.1.S1_at--362--2211Chr04:19471643..19471667 (25 bp)
ACAACCTTATTGTACTGAATAACAT
LOC_Os04g32630
OsAffx.14099.1.S1_at--673--4291Chr04:19471647..19471671 (25 bp)
CCTTATTGTACTGAATAACATTCTG
LOC_Os04g32630
OsAffx.14099.1.S1_at--482--9811NONE
TAACATTCTGTTAAAGGCCATCCGA
NONE
OsAffx.14099.1.S1_at--549--2511NONE
AACATTCTGTTAAAGGCCATCCGAT
NONE
OsAffx.14099.1.S1_at--1027--2071NONE
ACATTCTGTTAAAGGCCATCCGATG
NONE
OsAffx.14099.1.S1_at--686--3591NONE
CATTCTGTTAAAGGCCATCCGATGG
NONE
OsAffx.14099.1.S1_at--496--8771Chr04:19472761..19472785 (25 bp)
TGTTTTGAAAATGCTTTCTAAGGCA
LOC_Os04g32630
Target Sequence 
GAACTCATAAAAGAGGAGTTCCCAACCCCTTCTCCCAAATACAACCTTATTGTACTGAATAACATTCTGTTAAAGGCCAT
CCGATGGGAGCCTCCACTTGTTTTGAAAATGCTTTCTAAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis