Browse Element(s) Details

OsAffx.27622.2.S1_at

Description

tigr:9634.m01372
TID=OsAffx.27622.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g13780	10/11	expressed protein
LOC_Os04g32610	1/11	expressed protein
LOC_Os01g27570	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g13740	OsAffx.29742.5.S1_s_at	11/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.1.S1_x_at	11/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.2.S1_x_at	7/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13740	OsAffx.29742.3.S1_x_at	6/11	6	+	7615604..7618653	transposon protein, putative, unclassified
LOC_Os06g13750	OsAffx.29675.3.S1_at	11/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.3.S1_x_at	11/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.2.S1_x_at	8/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.1.S1_x_at	6/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13750	OsAffx.29675.4.S1_x_at	3/11	6	+	7618835..7622920	expressed protein
LOC_Os06g13760	OsAffx.27621.1.S1_s_at	11/11	6	+	7628758..7630268	glycosyl transferase family 8 protein, putative, expressed
LOC_Os06g13770	OsAffx.24421.1.S1_at	7/11	6	+	7634956..7636291	transposon protein, putative, unclassified
LOC_Os06g13770	OsAffx.17654.2.S1_at	4/11	6	+	7634956..7636291	transposon protein, putative, unclassified
LOC_Os06g13780	OsAffx.27622.2.S1_at	10/11	6	+	7641071..7643454	expressed protein
LOC_Os06g13780	OsAffx.27622.1.S1_x_at	8/11	6	+	7641071..7643454	expressed protein
LOC_Os06g13789	NA	NA	6	+	7644975..7645329	NA
LOC_Os06g13800	NA	NA	6	+	7646853..7647415	hypothetical protein
LOC_Os06g13810	Os.10991.1.S1_at	11/11	6	+	7647923..7653339	Pyrophosphate-fructose 6-phosphate 1-phosphotransferase beta subunit, putative, expressed
LOC_Os06g13820	Os.5175.1.S1_at	11/11	6	+	7660736..7669035	Dynamin-2A, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.27622.2.S1_at--271--127	1	Chr06:7641133..7641157 (25 bp)	AGATAGCATCATCTCGATGGTCTGC	LOC_Os06g13780
OsAffx.27622.2.S1_at--1053--407	1	Chr06:7641163..7641187 (25 bp)	CGAGCTCGAGATGTGGTATTTCCCC	LOC_Os06g13780
OsAffx.27622.2.S1_at--1158--59	1	Chr06:7641193..7641217 (25 bp)	ATGCGAATCCTTTGAGCCTTCCGGA	LOC_Os06g13780
OsAffx.27622.2.S1_at--261--1067	1	Chr06:7641211..7641235 (25 bp)	TTCCGGATGCCAACTCCTGAAGCGT	LOC_Os06g13780
OsAffx.27622.2.S1_at--387--385	1	Chr06:7641227..7641251 (25 bp)	CTGAAGCGTCCAGGGCGTATCCGTC	LOC_Os06g13780
OsAffx.27622.2.S1_at--794--963	1	Chr06:7641259..7641283 (25 bp)	TCAGGCGCTGCTGTTGTTCAAACAA	LOC_Os06g13780
OsAffx.27622.2.S1_at--1041--423	3	Chr06:7641293..7641413 (25 bp)	CCGTCTCTCCTTTCAAGTTACATAG	LOC_Os06g13780
OsAffx.27622.2.S1_at--891--155	1	NONE	AGCTACTGACTGGATATTTTTTCCC	NONE
OsAffx.27622.2.S1_at--1061--19	4	Chr06:7642491..7642515 (25 bp)	ATTTCCCTATCATCCTTCTCTATTG	LOC_Os06g13780
OsAffx.27622.2.S1_at--452--1057	2	Chr06:7642506..7642568 (25 bp)	TTCTCTATTGCCTTCTGCAATACCT	LOC_Os06g13780
OsAffx.27622.2.S1_at--20--1021	1	Chr06:7642600..7642624 (25 bp)	TATATTCAGCTATCCGTCTTTTAAA	LOC_Os06g13780

Target Sequence

AGATAGCATCATCTCGATGGTCTGCGAGCTCGAGCTCGAGATGTGGTATTTCCCCATCTCATGCGAATCCTTTGAGCCTT
CCGGATGCCAACTCCTGAAGCGTCCAGGGCGTATCCGTCTCCATCGTCAGGCGCTGCTGTTGTTCAAACAAGCTGATCTA
CCGTCTCTCCTTTCAAGTTACATAGTTCAAGTCGTCATTCATTACTTCGACAAACAGTCTGCCGAGTTCATCAACTCAGC
TGCTGGGGCCATCACCGTCTCCTACGTCATGCAGCTACTGACTGGATATTTTTTCCCTTCCATTTCCCTATCATCCTTCT
CTATTGCCTTCTGCAATACCTATTTTGATGGAATTATTGAAGTTTTCATAATTATATTCAGCTATCCGTCTTTTAAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis