Browse Element(s) Details


Os.10991.1.S1_at

Description gb:AK060464.1
DB_XREF= gi:32970482
TID=Os.10991.1
CNT=41
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10991 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for pyrophosphate-fructose 6-phosphate 1-phosphotransferase, partial sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-012-C08, full insert sequence.
FL= gb:AK069095.1 gb:AK060464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1381011/11Pyrophosphate-fructose 6-phosphate 1-phosphotransferase beta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13760OsAffx.27621.1.S1_s_at11/116+7628758..7630268glycosyl transferase family 8 protein, putative, expressed
LOC_Os06g13770OsAffx.24421.1.S1_at7/116+7634956..7636291transposon protein, putative, unclassified
LOC_Os06g13770OsAffx.17654.2.S1_at4/116+7634956..7636291transposon protein, putative, unclassified
LOC_Os06g13780OsAffx.27622.2.S1_at10/116+7641071..7643454expressed protein
LOC_Os06g13780OsAffx.27622.1.S1_x_at8/116+7641071..7643454expressed protein
LOC_Os06g13789NANA6+7644975..7645329NA
LOC_Os06g13800NANA6+7646853..7647415hypothetical protein
LOC_Os06g13810Os.10991.1.S1_at11/116+7647923..7653339Pyrophosphate-fructose 6-phosphate 1-phosphotransferase beta subunit, putative, expressed
LOC_Os06g13820Os.5175.1.S1_at11/116+7660736..7669035Dynamin-2A, putative, expressed
LOC_Os06g13830OsAffx.15414.1.S1_x_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830Os.48095.1.S1_s_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830OsAffx.15414.1.S1_s_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830OsAffx.22010.1.S1_x_at3/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006096biological_processglycolysis
GO:0005945cellular_component6-phosphofructokinase complex
GO:0003872molecular_function6-phosphofructokinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10991.1.S1_at--95--6631Chr06:7648891..7648915 (25 bp)
GTTGGTGGAACTGCATTGACATCGT
LOC_Os06g13810
Os.10991.1.S1_at--210--6311Chr06:7648456..7648480 (25 bp)
GATGAGTGGTCCCTCAAGAACCATT
LOC_Os06g13810
Os.10991.1.S1_at--249--2751Chr06:7648442..7648465 (24 bp)
AAGAACCATTACATCAGCCCTGGTC
LOC_Os06g13810
Os.10991.1.S1_at--495--1091Chr06:7648314..7648338 (25 bp)
AGTGGCCCTGGAAGCAACGATGCGA
LOC_Os06g13810
Os.10991.1.S1_at--621--2591Chr06:7648299..7648323 (25 bp)
AACGATGCGAACCACACCTTGATGT
LOC_Os06g13810
Os.10991.1.S1_at--40--3631Chr06:7648282..7648306 (25 bp)
CTTGATGTTGGAACTCGGCGCCGAG
LOC_Os06g13810
Os.10991.1.S1_at--288--6031Chr06:7648189..7648213 (25 bp)
GAGATGGAACCTCGCAGAGTGACCT
LOC_Os06g13810
Os.10991.1.S1_at--111--8931Chr06:7648170..7648194 (25 bp)
TGACCTGCAGGCTCCATATTTGTGG
LOC_Os06g13810
Os.10991.1.S1_at--793--8851Chr06:7648065..7648089 (25 bp)
TGATCCATTGCTCCATTTTTACACA
LOC_Os06g13810
Os.10991.1.S1_at--1061--8751Chr06:7648021..7648045 (25 bp)
TGTAGCTCTGGGTTTTGTTCAACTG
LOC_Os06g13810
Os.10991.1.S1_at--1106--10751Chr06:7647972..7647996 (25 bp)
TTGTTCAACTGGATGCGACGCTATA
LOC_Os06g13810
Target Sequence 
GTTGGTGGAACTGCATTGACATCGTTGATGGATGTTGAGAGGAGGCACGGAAAGTACAAGCCAGTGATCAAGAAGGCTAT
GGTGGAACTTGACGGGGCACCGTTTAAGAAGTTTGCTTCATTGCGAGATGAGTGGTCCCTCAAGAACCATTACATCAGCC
CTGGTCCCATCCAGTTCAGTGGCCCTGGAAGCAACGATGCGAACCACACCTTGATGTTGGAACTCGGCGCCGAGGCATAG
AGAGACACGACGATACCGACGTGTACCTTTTAAATTTTTTGTTCTTACAGTTTTGAAAAGTTGAGATGGAACCTCGCAGA
GTGACCTGCAGGCTCCATATTTGTGGAGTGCTCAATAAGAGGTTCCATTGGGAGTTTCTGTGGAGTAGAGATATGTGTAC
CAATAATAACTGATGTTAGCTTTGCATGATCCATTGCTCCATTTTTACACAGAAGTTAACTTGGTTTTATTGTAGCTCTG
GGTTTTGTTCAACTGGATGCGACGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10991.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis