Browse Element(s) Details


OsAffx.15414.1.S1_x_at

Description tigr:9634.m01380
TID=OsAffx.15414.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolase family 9
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1383011/11Glycosyl hydrolase family 9 protein, expressed
LOC_Os02g504903/11Glycosyl hydrolase family 9 protein, expressed
LOC_Os08g329403/11Glycosyl hydrolase family 9 protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13789NANA6+7644975..7645329NA
LOC_Os06g13800NANA6+7646853..7647415hypothetical protein
LOC_Os06g13810Os.10991.1.S1_at11/116+7647923..7653339Pyrophosphate-fructose 6-phosphate 1-phosphotransferase beta subunit, putative, expressed
LOC_Os06g13820Os.5175.1.S1_at11/116+7660736..7669035Dynamin-2A, putative, expressed
LOC_Os06g13830OsAffx.15414.1.S1_x_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830Os.48095.1.S1_s_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830OsAffx.15414.1.S1_s_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830OsAffx.22010.1.S1_x_at3/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13839NANA6+7692247..7692891RNA recognition motif family protein
LOC_Os06g13850Os.52969.1.S2_at11/116+7693325..7695943F-box domain containing protein, expressed
LOC_Os06g13850Os.52969.1.S1_at11/116+7693325..7695943F-box domain containing protein, expressed
LOC_Os06g13860Os.24183.1.A1_at11/116+7697454..7702775Poly polymerase catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15414.1.S1_x_at--972--6971Chr06:7671036..7671060 (25 bp)
GTACGTGCGGCAGTGGAACAACATG
LOC_Os06g13830
OsAffx.15414.1.S1_x_at--17--8173Chr02:30835990..30836158 (25 bp)
GGAACAACATGCAGTACGTCACCAA
LOC_Os02g50490
OsAffx.15414.1.S1_x_at--824--2611Chr06:7670834..7670858 (25 bp)
AACCCGCGCGGGATGAGCTACCTCG
LOC_Os06g13830
OsAffx.15414.1.S1_x_at--407--7991Chr06:7670824..7670848 (25 bp)
GGATGAGCTACCTCGTCGGCTACGG
LOC_Os06g13830
OsAffx.15414.1.S1_x_at--686--9971Chr06:7670816..7670840 (25 bp)
TACCTCGTCGGCTACGGCGAGAGGT
LOC_Os06g13830
OsAffx.15414.1.S1_x_at--432--8371Chr06:7670766..7670790 (25 bp)
GGCGTCGATCGTGCCGTACAAGGAC
LOC_Os06g13830
OsAffx.15414.1.S1_x_at--139--4491Chr06:7670754..7670778 (25 bp)
GCCGTACAAGGACAGCAAGGAGTTC
LOC_Os06g13830
OsAffx.15414.1.S1_x_at--446--2151Chr06:7670743..7670767 (25 bp)
ACAGCAAGGAGTTCATCGGGTGCGC
LOC_Os06g13830
OsAffx.15414.1.S1_x_at--197--5651Chr06:7670633..7670657 (25 bp)
GACAGGTTCCGCGACGACCGCGAGA
LOC_Os06g13830
OsAffx.15414.1.S1_x_at--541--9873Chr02:30836385..30836409 (25 bp)
TACATGCAGACGGAGGCGTGCACGT
LOC_Os02g50490
OsAffx.15414.1.S1_x_at--804--1393Chr02:30836392..30836416 (25 bp)
AGACGGAGGCGTGCACGTACAACAC
LOC_Os02g50490
Target Sequence 
GTACGTGCGGCAGTGGAACAACATGCAGTACGTCACCAACGCCGCGTTCCTCCTCTCCGCCTACTCGGACTACCTCGCCG
GCGCCGGAGACGGAGACGGGGACGGCGGCGGCGGCGTCGCGACGTGCGTGGGCGGCGGGGGCGCGGGCGCCGGGGAGGTG
TTCGCGGCGGCGAGGGAGCAGGTGGACTACGTGCTGGGGAGCAACCCGCGCGGGATGAGCTACCTCGTCGGCTACGGCGA
GAGGTTCCCGGCGAGGGTGCACCACCGGGCGGCGTCGATCGTGCCGTACAAGGACAGCAAGGAGTTCATCGGGTGCGCGC
AGGGGTTCGACGACTGGTTCGGCCGCCGGGGCGCCAACCCCAACGTCGTCGTCGGCGCCATCGTCGGCGGCCCGGACCGC
CGCGACAGGTTCCGCGACGACCGCGAGAACTACATGCAGACGGAGGCGTGCACGTACAACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15414.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis