Browse Element(s) Details


Os.52969.1.S1_at

Description gb:AK110713.1
DB_XREF= gi:32995922
TID=Os.52969.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52969 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-D03, full insert sequence.
FL= gb:AK070362.1 gb:AK070175.1 gb:AK110713.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1385011/11F-box domain containing protein, expressed
LOC_Os06g139901/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13820Os.5175.1.S1_at11/116+7660736..7669035Dynamin-2A, putative, expressed
LOC_Os06g13830OsAffx.15414.1.S1_x_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830Os.48095.1.S1_s_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830OsAffx.15414.1.S1_s_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830OsAffx.22010.1.S1_x_at3/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13839NANA6+7692247..7692891RNA recognition motif family protein
LOC_Os06g13850Os.52969.1.S2_at11/116+7693325..7695943F-box domain containing protein, expressed
LOC_Os06g13850Os.52969.1.S1_at11/116+7693325..7695943F-box domain containing protein, expressed
LOC_Os06g13860Os.24183.1.A1_at11/116+7697454..7702775Poly polymerase catalytic domain containing protein, expressed
LOC_Os06g13870OsAffx.4833.1.S1_x_at11/116+7708066..7709507U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52969.1.S1_at--122--5892Chr06:7784962..7784986 (25 bp)
GAGCGCTGGAGGAACATCCACTGGA
LOC_Os06g13990
Os.52969.1.S1_at--495--4591Chr06:7695364..7695388 (25 bp)
GCGCACGTCTGCGACTGTTAGGAAT
LOC_Os06g13850
Os.52969.1.S1_at--67--10115Chr12:26889368..26889392 (25 bp)
TATGTGAGTCCAGAGGCCAAGTCCT
NONE
Os.52969.1.S1_at--791--2855Chr12:26889386..26889410 (25 bp)
AAGTCCTGGCGGTTGAGCGCATGCA
NONE
Os.52969.1.S1_at--401--3535Chr12:26889405..26889429 (25 bp)
CATGCAGGAGCACGCCATGCGAGAA
NONE
Os.52969.1.S1_at--560--5455Chr12:26889470..26889493 (24 bp)
GAACGCGTGAAACCAGGTCGTCCAG
NONE
Os.52969.1.S1_at--546--7275Chr12:26889488..26889512 (25 bp)
GTCCAGGCTGCCATGCGTACGTGCG
NONE
Os.52969.1.S1_at--1058--9935Chr12:26889505..26889529 (25 bp)
TACGTGCGCGTGAAGCTCGCTAAGT
NONE
Os.52969.1.S1_at--682--4755Chr12:26889542..26889566 (25 bp)
GCTGCGTCGCCGTGGGTATAAAACT
NONE
Os.52969.1.S1_at--388--2393Chr10:13132487..13132511 (25 bp)
AAACTGGCTGTGTAGGCTCGTATTT
NONE
Os.52969.1.S1_at--125--7291Chr06:7694984..7695008 (25 bp)
GTGCCGTGTGAACTTTCAGTGTGTA
LOC_Os06g13850
Target Sequence 
GAGCGCTGGAGGAACATCCACTGGAGCGCGACGCAGTGGAGCACAGCGGTGCTCTGCGCCGCGCACGTCTGCGACTGTTA
GGAATAAACGCGTTGTCATGGCCGTGCCTGCGTTTTGCCGCGGCGCGGCAGTGGCGCATGGCGTCGTGAGTCCAGGAGTC
GTGCGTGTGTGCAGCATTGTGGTGGTGCTGTACACGTTGTGTGTGTGTGTTCGATGTATGTGAGTCCAGAGGCCAAGTCC
TGGCGGTTGAGCGCATGCAGGAGCACGCCATGCGAGAAGGATGGAGGCCCGTTCATGTGGAGGAGTATGTGGCTCACGAA
CGCGTGAAACCAGGTCGTCCAGGCTGCCATGCGTACGTGCGCGTGAAGCTCGCTAAGTGGGTGCGTGGGCGCTGCGTCGC
CGTGGGTATAAAACTGGCTGTGTAGGCTCGTATTTAAGNAGTGCCGTGTGAACTTTCAGTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52969.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis