Browse Element(s) Details


OsAffx.4833.1.S1_x_at

Description tigr:9634.m01395
TID=OsAffx.4833.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Avr9Cf-9 rapidly elicited protein 74, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1387011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13839NANA6+7692247..7692891RNA recognition motif family protein
LOC_Os06g13850Os.52969.1.S2_at11/116+7693325..7695943F-box domain containing protein, expressed
LOC_Os06g13850Os.52969.1.S1_at11/116+7693325..7695943F-box domain containing protein, expressed
LOC_Os06g13860Os.24183.1.A1_at11/116+7697454..7702775Poly polymerase catalytic domain containing protein, expressed
LOC_Os06g13870OsAffx.4833.1.S1_x_at11/116+7708066..7709507U-box domain containing protein, expressed
LOC_Os06g13880Os.57211.1.S1_at11/116+7721729..7722355expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4833.1.S1_x_at--993--531Chr06:7708947..7708971 (25 bp)
ATCGCGAGGGCCCACGGCATGTGCG
LOC_Os06g13870
OsAffx.4833.1.S1_x_at--248--6131Chr06:7708952..7708976 (25 bp)
GAGGGCCCACGGCATGTGCGACGCG
LOC_Os06g13870
OsAffx.4833.1.S1_x_at--196--7251Chr06:7709223..7709247 (25 bp)
GTCCCGGTGCTCGTCAAGAAGATGT
LOC_Os06g13870
OsAffx.4833.1.S1_x_at--995--6251Chr06:7709243..7709267 (25 bp)
GATGTTCCGGGTGTCCGACATGGCG
LOC_Os06g13870
OsAffx.4833.1.S1_x_at--515--871Chr06:7709262..7709286 (25 bp)
ATGGCGACGGACTTCGCCGTGTCCG
LOC_Os06g13870
OsAffx.4833.1.S1_x_at--815--9111Chr06:7709374..7709398 (25 bp)
TGCTGCTCCAGGTGGGCTGCGCCGG
LOC_Os06g13870
OsAffx.4833.1.S1_x_at--239--3751Chr06:7709427..7709451 (25 bp)
CTCAAGATGCTCAACGGGTCGCGAG
LOC_Os06g13870
OsAffx.4833.1.S1_x_at--1006--9711Chr06:7709428..7709452 (25 bp)
TCAAGATGCTCAACGGGTCGCGAGG
LOC_Os06g13870
OsAffx.4833.1.S1_x_at--753--9331Chr06:7709445..7709469 (25 bp)
TCGCGAGGCAGCGTCGAATGCATCG
LOC_Os06g13870
OsAffx.4833.1.S1_x_at--127--6211Chr06:7709449..7709473 (25 bp)
GAGGCAGCGTCGAATGCATCGAGAC
LOC_Os06g13870
OsAffx.4833.1.S1_x_at--737--5071Chr06:7709452..7709476 (25 bp)
GCAGCGTCGAATGCATCGAGACAGT
LOC_Os06g13870
Target Sequence 
ATCGCGAGGGCCCACGGCATGTGCGACGCGCTCGTCGGCCTCGTCACGAGCCCCGTCTCCTCGCAGGCCACCAAGGCCGC
CCTCGTCACGGCCTACTACCTCGTCTCCTCCGGCGACCGCGCCGCCGCGCGCTTCGCGGAGCTCGGCGTGGTCCCCGCCG
CCGTGGAGCTCCTCGTGGACGCCGACAAGGGGACGAGCGAGAAGGCCCTGGCCGTGCTCGACGCCGCCCTGTGCGCCGAC
GCCGGCGTCGAGTCCGCGCGCGCGCACGCGCTGACCGTCCCGGTGCTCGTCAAGAAGATGTTCCGGGTGTCCGACATGGC
GACGGACTTCGCCGTGTCCGCGCTCTGGCGCCTCTGCCGCGCCGGCGCCGGCGCCGCGCCGTGCCGCGCCGAGGCGCTCC
GCGTCGGCGCGTTCCAGAAGCTGCTGCTGCTGCTCCAGGTGGGCTGCGCCGGCGTCACCAAGGAGCGCGCCAGCGAGCTG
CTCAAGATGCTCAACGGGTCGCGAGGCAGCGTCGAATGCATCGAGACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4833.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis