Browse Element(s) Details


Os.24183.1.A1_at

Description gb:AK065783.1
DB_XREF= gi:32975801
TID=Os.24183.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24183 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038L18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038L18, full insert sequence.
FL= gb:AK065783.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1386011/11Poly polymerase catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13830OsAffx.15414.1.S1_x_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830Os.48095.1.S1_s_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830OsAffx.15414.1.S1_s_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830OsAffx.22010.1.S1_x_at3/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13839NANA6+7692247..7692891RNA recognition motif family protein
LOC_Os06g13850Os.52969.1.S2_at11/116+7693325..7695943F-box domain containing protein, expressed
LOC_Os06g13850Os.52969.1.S1_at11/116+7693325..7695943F-box domain containing protein, expressed
LOC_Os06g13860Os.24183.1.A1_at11/116+7697454..7702775Poly polymerase catalytic domain containing protein, expressed
LOC_Os06g13870OsAffx.4833.1.S1_x_at11/116+7708066..7709507U-box domain containing protein, expressed
LOC_Os06g13880Os.57211.1.S1_at11/116+7721729..7722355expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000303biological_processresponse to superoxide
GO:0006979biological_processresponse to oxidative stress
GO:0009723biological_processresponse to ethylene stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0010193biological_processresponse to ozone
GO:0012501biological_processprogrammed cell death
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24183.1.A1_at--496--2291Chr06:7702006..7702030 (25 bp)
AAATGTAGTTCTCCATGGTCCTGAT
LOC_Os06g13860
Os.24183.1.A1_at--701--8591Chr06:7702021..7702045 (25 bp)
TGGTCCTGATCACCCTGCAAAGTTG
LOC_Os06g13860
Os.24183.1.A1_at--238--5891Chr06:7702055..7702076 (22 bp)
GAGCGTAATGCTCCGTCACTAATAA
LOC_Os06g13860
Os.24183.1.A1_at--853--1171Chr06:7702195..7702219 (25 bp)
AGTACAACGCCCCAATCAAGGTGTT
LOC_Os06g13860
Os.24183.1.A1_at--865--1531Chr06:7702229..7702253 (25 bp)
AGCATCATCACCCAAGCAGCAGATA
LOC_Os06g13860
Os.24183.1.A1_at--795--5051Chr06:7702244..7702268 (25 bp)
GCAGCAGATACACTCGTGGCGTTAT
LOC_Os06g13860
Os.24183.1.A1_at--28--9651Chr06:7702422..7702445 (24 bp)
TCAGGTGTTTGTCGCTCCACTGTAA
LOC_Os06g13860
Os.24183.1.A1_at--448--10871Chr06:7702476..7702500 (25 bp)
TTGGCAGCGCAAATTTCACCTTGTT
LOC_Os06g13860
Os.24183.1.A1_at--159--6771Chr06:7702498..7702522 (25 bp)
GTTAACTTCGATGGTTATTCTGCAG
LOC_Os06g13860
Os.24183.1.A1_at--959--4711Chr06:7702671..7702695 (25 bp)
GCTGAATGTTCAGAGCCCAAGCCCA
LOC_Os06g13860
Os.24183.1.A1_at--196--1671Chr06:7702684..7702708 (25 bp)
AGCCCAAGCCCAAGCTTCAGTTTGT
LOC_Os06g13860
Target Sequence 
AAATGTAGTTCTCCATGGTCCTGATCACCCTGCAAAGTTGGCAGATACAGAGCGTAATGCTCCGTCACTAATAAATGGGG
CGTTGAGAAGAGAGGTACAAGTACAACGCCCCAATCAAGGTGTTGATGCTAGTAGCATCATCACCCAAGCAGCAGATACA
CTCGTGGCGTTATCAGCCCACGGTGAGAAAGGCTGGTAGAACCGTAGAAGAGTTATGGTTCATTTGTTACTCAGGTGTTT
GTCGCTCCACTGTAAATAAGTGGAGGAATCCATCTTTTCCTCCCTTTGGCAGCGCAAATTTCACCTTGTTAACTTCGATG
GTTATTCTGCAGTGGTTAAGTACTGTTGCAGTGTTGCTTCTATACTAACCTGGCTGGTTACTCAACAGAGATTGTACATT
TTGTACAGTTGGTCATGCTTTTTCACATGTGTATATACATTGACTGGCATATTTCATAGTAGTACATAAACCTGAAAGTT
GCTGAATGTTCAGAGCCCAAGCCCAAGCTTCAGTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24183.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis