Browse Element(s) Details


Os.48095.1.S1_s_at

Description gb:AK065325.1
DB_XREF= gi:32975343
TID=Os.48095.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48095 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002P24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002P24, full insert sequence.
FL= gb:AK065325.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1383011/11Glycosyl hydrolase family 9 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g13789NANA6+7644975..7645329NA
LOC_Os06g13800NANA6+7646853..7647415hypothetical protein
LOC_Os06g13810Os.10991.1.S1_at11/116+7647923..7653339Pyrophosphate-fructose 6-phosphate 1-phosphotransferase beta subunit, putative, expressed
LOC_Os06g13820Os.5175.1.S1_at11/116+7660736..7669035Dynamin-2A, putative, expressed
LOC_Os06g13830OsAffx.15414.1.S1_x_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830Os.48095.1.S1_s_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830OsAffx.15414.1.S1_s_at11/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13830OsAffx.22010.1.S1_x_at3/116+7670279..7673548Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g13839NANA6+7692247..7692891RNA recognition motif family protein
LOC_Os06g13850Os.52969.1.S2_at11/116+7693325..7695943F-box domain containing protein, expressed
LOC_Os06g13850Os.52969.1.S1_at11/116+7693325..7695943F-box domain containing protein, expressed
LOC_Os06g13860Os.24183.1.A1_at11/116+7697454..7702775Poly polymerase catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48095.1.S1_s_at--137--8811Chr06:7670557..7670581 (25 bp)
TGTTCGCCATGCTCAACCGGCTGTC
LOC_Os06g13830
Os.48095.1.S1_s_at--44--9711Chr06:7670545..7670569 (25 bp)
TCAACCGGCTGTCCCGGCAAGAGTC
LOC_Os06g13830
Os.48095.1.S1_s_at--937--3211Chr06:7670528..7670552 (25 bp)
CAAGAGTCGCCGTCGACGACAACGA
LOC_Os06g13830
Os.48095.1.S1_s_at--142--5911Chr06:7670487..7670511 (25 bp)
GAGTAGCCCGGAAATGGGCCTAAGT
LOC_Os06g13830
Os.48095.1.S1_s_at--227--7711Chr06:7670440..7670464 (25 bp)
GGGTCTGTACAATTTTGCCCCTATT
LOC_Os06g13830
Os.48095.1.S1_s_at--596--171Chr06:7670429..7670453 (25 bp)
ATTTTGCCCCTATTCTTTTGTTCAT
LOC_Os06g13830
Os.48095.1.S1_s_at--442--4531Chr06:7670424..7670448 (25 bp)
GCCCCTATTCTTTTGTTCATTCTTT
LOC_Os06g13830
Os.48095.1.S1_s_at--771--4811Chr06:7670386..7670410 (25 bp)
GCTCTCTCCCCTTCGCAGGGAAAAA
LOC_Os06g13830
Os.48095.1.S1_s_at--910--2231Chr06:7670335..7670359 (25 bp)
AAAATTGGGAGGTGGCATTTGGCAA
LOC_Os06g13830
Os.48095.1.S1_s_at--728--10851Chr06:7670317..7670341 (25 bp)
TTGGCAAGCAAATGCAAATCCCCTC
LOC_Os06g13830
Os.48095.1.S1_s_at--220--3031Chr06:7670301..7670325 (25 bp)
AATCCCCTCCCGGTAAATATCAGAG
LOC_Os06g13830
Target Sequence 
TGTTCGCCATGCTCAACCGGCTGTCCCGGCAAGAGTCGCCGTCGACGACAACGACGACGACGGCGACGACGAGTAGCCCG
GAAATGGGCCTAAGTGTAAATAGATAGTCACACGAGGGGGTCTGTACAATTTTGCCCCTATTCTTTTGTTCATTCTTTGT
AGATGNGAGGGGCTCTCTCCCCTTCGCAGGGAAAAAAAATATTATTTGTATACGAGGGAAAAAAAATTGGGAGGTGGCAT
TTGGCAAGCAAATGCAAATCCCCTCCCGGTAAATATCAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48095.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis