Browse Element(s) Details


OsAffx.22010.1.S1_x_at

Description gb:NM_188958.1
DB_XREF= gi:34904999
GEN=P0456B03.7
TID=OsAffx.22010.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0456B03.7 (P0456B03.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3294011/11Glycosyl hydrolase family 9 protein
LOC_Os02g504903/11Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g138303/11Glycosyl hydrolase family 9 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32910Os.32314.2.S1_x_at11/118+20269184..20273131expressed protein
LOC_Os08g32910Os.32314.1.S1_at11/118+20269184..20273131expressed protein
LOC_Os08g32920Os.9608.1.S1_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.2.S1_x_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_x_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.20425.2.S1_at1/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32930Os.33675.1.S1_at10/118+20290897..20294935expressed protein
LOC_Os08g32940OsAffx.22010.1.S1_at11/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32940OsAffx.22010.1.S1_x_at11/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32940OsAffx.15414.1.S1_x_at3/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32950OsAffx.20313.1.S1_x_at3/118+20313716..20315744hypothetical protein
LOC_Os08g32960Os.31636.1.S1_at11/118+20317190..20319428Endonuclease/Exonuclease/phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22010.1.S1_x_at--381--4991Chr08:20297144..20297168 (25 bp)
GCATGCTGTTCGTCCGCCGCTGGAA
LOC_Os08g32940
OsAffx.22010.1.S1_x_at--558--7251Chr08:20297133..20297157 (25 bp)
GTCCGCCGCTGGAACAACATGCAGT
LOC_Os08g32940
OsAffx.22010.1.S1_x_at--18--8173Chr02:30835990..30836158 (25 bp)
GGAACAACATGCAGTACGTCACCAA
LOC_Os02g50490
OsAffx.22010.1.S1_x_at--1054--1791Chr08:20296802..20296826 (25 bp)
ACCCGAACGTGGTCGCCGGAGCCAT
LOC_Os08g32940
OsAffx.22010.1.S1_x_at--725--1011Chr08:20296752..20296776 (25 bp)
AGGTTCAGGGACAGCCGCGACAACT
LOC_Os08g32940
OsAffx.22010.1.S1_x_at--173--5651Chr08:20296743..20296767 (25 bp)
GACAGCCGCGACAACTACATGCAGA
LOC_Os08g32940
OsAffx.22010.1.S1_x_at--540--9873Chr02:30836385..30836409 (25 bp)
TACATGCAGACGGAGGCGTGCACGT
LOC_Os02g50490
OsAffx.22010.1.S1_x_at--803--1393Chr02:30836392..30836416 (25 bp)
AGACGGAGGCGTGCACGTACAACAC
LOC_Os02g50490
OsAffx.22010.1.S1_x_at--1059--811Chr08:20296689..20296713 (25 bp)
ATGGTCGGCGTCTTCGCGCACCTGC
LOC_Os08g32940
OsAffx.22010.1.S1_x_at--54--3851Chr08:20296668..20296692 (25 bp)
CTGCACGCCCAGAAGATGGCGGCGA
LOC_Os08g32940
OsAffx.22010.1.S1_x_at--1049--8331Chr08:20296651..20296675 (25 bp)
GGCGGCGAGGACTGCTAATAATAAT
LOC_Os08g32940
Target Sequence 
GCATGCTGTTCGTCCGCCGCTGGAACAACATGCAGTACGTCACCAACGCCGCCTTCCTCCTCACCGTCTACTCCCGCTAC
CTCCGCGACTCCGGCGGCGACACCATCCGGTGCTCCGGTGGGGCTATGGCAACCGGCGACGAGTTGGCGGCGATGGCGAG
GGCGCAGGCGGACTACGTGCTGGGCGACAACCCGGCGGGGGTGAGCTACATGGTCGGGTACGGGCGGCGGTTCCCGCGGC
GGGTGCACCACCGCGGGGCGTCCATGGTGTCGCACCGCGCGGACGGGCGGTTCGTGGGGTGCGTGCAGGGGTACGACCGC
TGGTTCCGGCGCGGCGGCGCGAACCCGAACGTGGTCGCCGGAGCCATCGTCGGCGGGCCGGACGACCGCGACAGGTTCAG
GGACAGCCGCGACAACTACATGCAGACGGAGGCGTGCACGTACAACACCGCGCCCATGGTCGGCGTCTTCGCGCACCTGC
ACGCCCAGAAGATGGCGGCGAGGACTGCTAATAATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22010.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis