Browse Element(s) Details


Os.32314.2.S1_x_at

Description gb:NM_188955.1
DB_XREF= gi:34904993
GEN=P0456B03.4
TID=Os.32314.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456B03.4 (P0456B03.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0456B03.4 (P0456B03.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3291011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32870Os.15306.1.S1_a_at11/118+20246981..20253219Betaine-aldehyde dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os08g32880NANA8+20256722..20259445NB-ARC domain containing protein
LOC_Os08g32890OsAffx.17304.1.S1_at11/118+20262645..20265662NB-ARC domain containing protein
LOC_Os08g32900OsAffx.6010.1.S1_at11/118+20267291..20267671hypothetical protein
LOC_Os08g32910Os.32314.2.S1_x_at11/118+20269184..20273131expressed protein
LOC_Os08g32910Os.32314.1.S1_at11/118+20269184..20273131expressed protein
LOC_Os08g32920Os.9608.1.S1_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.2.S1_x_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_x_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.20425.2.S1_at1/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32930Os.33675.1.S1_at10/118+20290897..20294935expressed protein
LOC_Os08g32940OsAffx.22010.1.S1_at11/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32940OsAffx.22010.1.S1_x_at11/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32940OsAffx.15414.1.S1_x_at3/118+20296618..20298195Glycosyl hydrolase family 9 protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32314.2.S1_x_at--1092--4991Chr08:20271693..20271717 (25 bp)
GCATGTATGGCAAACCCTATGGATA
LOC_Os08g32910
Os.32314.2.S1_x_at--970--8091Chr08:20272296..20272320 (25 bp)
GGACCTTCATGGGATCATCACCGAG
LOC_Os08g32910
Os.32314.2.S1_x_at--442--7591Chr08:20272332..20272356 (25 bp)
GGGCATGTCTTTCAACCAGTTGCTC
LOC_Os08g32910
Os.32314.2.S1_x_at--544--851Chr08:20272391..20272415 (25 bp)
ATGGCAAATCAACCACTTGCGTCGC
LOC_Os08g32910
Os.32314.2.S1_x_at--564--9331Chr08:20272412..20272436 (25 bp)
TCGCCTTCATTCTCTCAATGTACAA
LOC_Os08g32910
Os.32314.2.S1_x_at--798--9531Chr08:20272448..20272472 (25 bp)
TCTTTGCTCCTTTCACGGAATCGAT
LOC_Os08g32910
Os.32314.2.S1_x_at--568--3051Chr08:20272466..20272671 (25 bp)
AATCGATCCAGATTCGAGACGCGTA
LOC_Os08g32910
Os.32314.2.S1_x_at--726--5991Chr08:20272662..20272686 (25 bp)
GAGACGCGTATATGCTCAAGATCTT
LOC_Os08g32910
Os.32314.2.S1_x_at--965--1871Chr08:20272700..20272724 (25 bp)
ACGAGGCTGCCAAGCTGGTGCAACA
LOC_Os08g32910
Os.32314.2.S1_x_at--215--8091Chr08:20272774..20272798 (25 bp)
GGAGCTGCCGGAGTACAACACGATC
LOC_Os08g32910
Os.32314.2.S1_x_at--511--6391Chr08:20272795..20272819 (25 bp)
GATCGAGCCGTACGCCAACATGAAC
LOC_Os08g32910
Target Sequence 
GCATGTATGGCAAACCCTATGGATATCATAACATGATATTTAGTTGGATTGATACGATGTCAGACAATTATCCACCACCA
CTGGATGCTAACCTGGTAATGGCTGTTATGTCAATGTGGACCAGATTACAACCACTTTATGCTTCTAACATGTGGAATGA
GGCCCTTAATAAACGACTTGGGACTGAGAAATTGGACCTTCATGGGATCATCACCGAGACCGGAAAACGGGGCATGTCTT
TCAACCAGTTGCTCACTATACCCGAGCAGGACGACTGGGAATACAGCGATGGCAAATCAACCACTTGCGTCGCCTTCATT
CTCTCAATGTACAAGAAGGCCGGGGTCTTTGCTCCTTTCACGGAATCGATCCAGATTCGAGACGCGTATATGCTCAAGAT
CTTCGAGGACAACCAGACGAGGCTGCCAAGCTGGTGCAACAGCGGGGCGGACAGGCTCCCGTTCTGCCAGATCCTGGGCG
AGTACAAGATGGAGCTGCCGGAGTACAACACGATCGAGCCGTACGCCAACATGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32314.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis