Browse Element(s) Details


Os.9608.3.S1_at

Description gb:NM_188956.1
DB_XREF= gi:34904995
GEN=P0456B03.5
TID=Os.9608.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9608 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456B03.5 (P0456B03.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0456B03.5 (P0456B03.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g329209/11Dynamin-2B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32870Os.15306.1.S1_a_at11/118+20246981..20253219Betaine-aldehyde dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os08g32880NANA8+20256722..20259445NB-ARC domain containing protein
LOC_Os08g32890OsAffx.17304.1.S1_at11/118+20262645..20265662NB-ARC domain containing protein
LOC_Os08g32900OsAffx.6010.1.S1_at11/118+20267291..20267671hypothetical protein
LOC_Os08g32910Os.32314.2.S1_x_at11/118+20269184..20273131expressed protein
LOC_Os08g32910Os.32314.1.S1_at11/118+20269184..20273131expressed protein
LOC_Os08g32920Os.9608.1.S1_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.2.S1_x_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_x_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.20425.2.S1_at1/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32930Os.33675.1.S1_at10/118+20290897..20294935expressed protein
LOC_Os08g32940OsAffx.22010.1.S1_at11/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32940OsAffx.22010.1.S1_x_at11/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32940OsAffx.15414.1.S1_x_at3/118+20296618..20298195Glycosyl hydrolase family 9 protein

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Gene Ontology Classification
GO idTypeName
GO:0000266biological_processmitochondrial fission
GO:0006896biological_processGolgi to vacuole transport
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0010152biological_processpollen maturation
GO:0016192biological_processvesicle-mediated transport
GO:0005794cellular_componentGolgi apparatus
GO:0009504cellular_componentcell plate
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9608.3.S1_at--151--231Chr08:20283889..20284042 (25 bp)
ATATTGGAACTCCTGCTCACAAGGC
LOC_Os08g32920
Os.9608.3.S1_at--412--31Chr08:20283891..20284044 (25 bp)
ATTGGAACTCCTGCTCACAAGGCTA
LOC_Os08g32920
Os.9608.3.S1_at--1149--8511Chr08:20283893..20284046 (25 bp)
TGGAACTCCTGCTCACAAGGCTATT
LOC_Os08g32920
Os.9608.3.S1_at--988--5111Chr08:20284426..20284450 (25 bp)
GCAAATGTCCCCAAGTTAAGCATGT
LOC_Os08g32920
Os.9608.3.S1_at--57--2991Chr08:20284429..20284453 (25 bp)
AATGTCCCCAAGTTAAGCATGTCTG
LOC_Os08g32920
Os.9608.3.S1_at--456--8711NONE
TGTCCCCAAGTTAAGCATGTCTGCT
NONE
Os.9608.3.S1_at--757--1211Chr08:20284439..20284498 (25 bp)
AGTTAAGCATGTCTGCTTCTTGCAT
LOC_Os08g32920
Os.9608.3.S1_at--939--3831Chr08:20284488..20284510 (23 bp)
CTGCTTCTTGCATTAATATCATTGA
LOC_Os08g32920
Os.9608.3.S1_at--526--3091Chr08:20284500..20284524 (25 bp)
AATATCATTGATCCTGTTGAGCAGG
LOC_Os08g32920
Os.9608.3.S1_at--677--9591Chr08:20284504..20284528 (25 bp)
TCATTGATCCTGTTGAGCAGGCTGT
LOC_Os08g32920
Os.9608.3.S1_at--1071--9871NONE
TACTTCGATAAGTAATCCAGGGAGC
NONE
Target Sequence 
ATATTGGAACTCCTGCTCACAAGGCTATTATACTGAAGGCTGAAAGTATGGCGGAAAAAACTGAATGGGTTACTAAGATT
AGGAGCATTGTTGACCAAAAAGGAGCTTCTGCAACGAGTGGTTTACCAATGAAGCAAAGCCATTCGGATGGTTCTCTAAT
GTCCACTTCTAAAAAGGATGGTTCTCTAGACACGATGCTTAGAAAGCCAGTAGATCCTGAGGAAGAGCTTAAATGGATAT
CTCAAGAAGTCCGTGGGTATGTGGAAGCTGTTCTCAGCAGTCTTGCGGCAAATGTCCCCAAGTTAAGCATGTCTGCTTCT
TGCATTAATATCATTGATCCTGTTGAGCAGGCTGTGGTTCTTTGCCAAGTTGAGAAGGCAAAGGAAGGCATGCTTAATCA
GCTCTATACTTCGATAAGTAATCCAGGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9608.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis