Browse Element(s) Details


Os.33675.1.S1_at

Description gb:AK099569.1
DB_XREF= gi:32984778
TID=Os.33675.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33675 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0456B03.6 (P0456B03.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034N11, full insert sequence.
FL= gb:AK099569.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3293010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32900OsAffx.6010.1.S1_at11/118+20267291..20267671hypothetical protein
LOC_Os08g32910Os.32314.2.S1_x_at11/118+20269184..20273131expressed protein
LOC_Os08g32910Os.32314.1.S1_at11/118+20269184..20273131expressed protein
LOC_Os08g32920Os.9608.1.S1_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.2.S1_x_at11/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.9608.3.S1_x_at9/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32920Os.20425.2.S1_at1/118+20275377..20285822Dynamin-2B, putative, expressed
LOC_Os08g32930Os.33675.1.S1_at10/118+20290897..20294935expressed protein
LOC_Os08g32940OsAffx.22010.1.S1_at11/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32940OsAffx.22010.1.S1_x_at11/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32940OsAffx.15414.1.S1_x_at3/118+20296618..20298195Glycosyl hydrolase family 9 protein
LOC_Os08g32950OsAffx.20313.1.S1_x_at3/118+20313716..20315744hypothetical protein
LOC_Os08g32960Os.31636.1.S1_at11/118+20317190..20319428Endonuclease/Exonuclease/phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33675.1.S1_at--961--5891Chr08:20292623..20292647 (25 bp)
GAGCTGATGGATTTCGTGAACCGAA
LOC_Os08g32930
Os.33675.1.S1_at--352--9711Chr08:20292654..20292678 (25 bp)
TCAACGACGCTGATACTTTCTGCAA
LOC_Os08g32930
Os.33675.1.S1_at--986--3231Chr08:20292676..20292700 (25 bp)
CAAGAAGTTGATCCGCGAGTCTCCA
LOC_Os08g32930
Os.33675.1.S1_at--816--6091Chr08:20292692..20292716 (25 bp)
GAGTCTCCAAGGCACAAGCAGCTAG
LOC_Os08g32930
Os.33675.1.S1_at--1015--8011NONE
GGAGGTCCGATCTGCTTATGTCAAG
NONE
Os.33675.1.S1_at--686--751Chr08:20294581..20294605 (25 bp)
ATGTCTTGGAGACCAGCCACATCGA
LOC_Os08g32930
Os.33675.1.S1_at--1078--5191Chr08:20294620..20294644 (25 bp)
GAATTTTGCAGAGTCCCATCAGGAG
LOC_Os08g32930
Os.33675.1.S1_at--427--9831Chr08:20294664..20294688 (25 bp)
TAAATCAATGCCCTTCCACGGATAC
LOC_Os08g32930
Os.33675.1.S1_at--1031--9851Chr08:20294694..20294718 (25 bp)
TACACGCGCGCATATCTGACAATGT
LOC_Os08g32930
Os.33675.1.S1_at--347--4971Chr08:20294818..20294842 (25 bp)
GCATGATCCCTTAGAACACCACAAA
LOC_Os08g32930
Os.33675.1.S1_at--383--1131Chr08:20294842..20294866 (25 bp)
AGTGCAGACAGCTGCTACAGATCTG
LOC_Os08g32930
Target Sequence 
GAGCTGATGGATTTCGTGAACCGAAACTCCCTCAACGACGCTGATACTTTCTGCAAGAAGTTGATCCGCGAGTCTCCAAG
GCACAAGCAGCTAGCAATGAGGATCTTGGAGGTCCGATCTGCTTATGTCAAGCATGATTTCGAGTGGGATAATCTGAAAA
GGTTATCTTTCAAGATGGTTGATGAGGCCAACACAAAGCTCATGAGGGACTATGTCTTGGAGACCAGCCACATCGAAGAC
GATAACTGATGAATTTTGCAGAGTCCCATCAGGAGATCTATCCATTCATGACACTAAATCAATGCCCTTCCACGGATACA
CAGCTACACGCGCGCATATCTGACAATGTTCTGTCAATCTTACATAGTTTGCATACAAGGTGTATATAAATAACACAAGC
TCAAGCCGAAGCTGAGGAATCTACAAAGCTCTGTACTGAAAGTCTGAAGCATGATCCCTTAGAACACCACAAAGTGCAGA
CAGCTGCTACAGATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis