Browse Element(s) Details


Os.20425.2.S1_at

Description gb:AK099096.1
DB_XREF= gi:32984305
TID=Os.20425.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20425 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023023C02, full insert sequence.
FL= gb:AK099096.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g257007/11UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os08g329201/11Dynamin-2B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25670OsAffx.31881.1.S1_at10/1112+14871873..14872340hypothetical protein
LOC_Os12g25680OsAffx.19826.1.S1_at10/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25680OsAffx.19826.2.S1_at1/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25690Os.10473.1.S1_at11/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25690Os.20425.2.S1_x_at1/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.1.S1_at11/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_x_at10/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_at7/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.10473.1.S1_at1/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25710Os.6059.1.S1_at11/1112+14894490..14902028Bifunctional aminoacyl-tRNA synthetase, putative, expressed
LOC_Os12g25720Os.54701.1.S1_at10/1112+14909584..14913966expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000266biological_processmitochondrial fission
GO:0006118biological_processelectron transport
GO:0006896biological_processGolgi to vacuole transport
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0010152biological_processpollen maturation
GO:0016192biological_processvesicle-mediated transport
GO:0005794cellular_componentGolgi apparatus
GO:0009504cellular_componentcell plate
GO:0003924molecular_functionGTPase activity
GO:0003979molecular_functionUDP-glucose 6-dehydrogenase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20425.2.S1_at--845--3731Chr12:14893551..14893575 (25 bp)
CTAAGAGTGCCACCCAAAATACCTC
LOC_Os12g25700
Os.20425.2.S1_at--940--7271Chr12:14893557..14893581 (25 bp)
GTGCCACCCAAAATACCTCTTGTAT
LOC_Os12g25700
Os.20425.2.S1_at--1136--4391Chr12:14893559..14893583 (25 bp)
GCCACCCAAAATACCTCTTGTATCA
LOC_Os12g25700
Os.20425.2.S1_at--674--9971Chr12:14893570..14893594 (25 bp)
TACCTCTTGTATCACATGAACTTCT
LOC_Os12g25700
Os.20425.2.S1_at--999--6891NONE
GTATCACATGAACTTCTTATAGCTG
NONE
Os.20425.2.S1_at--128--2111NONE
ACATGAACTTCTTATAGCTGATTTA
NONE
Os.20425.2.S1_at--742--1611NONE
AGCTGATTTATTCTCGTATTTCAAA
NONE
Os.20425.2.S1_at--532--10571Chr12:14893608..14893632 (25 bp)
TTCTCGTATTTCAAAGACGCTACAG
LOC_Os12g25700
Os.20425.2.S1_at--516--2751Chr12:14893621..14893645 (25 bp)
AAGACGCTACAGATTAATAATGCAT
LOC_Os12g25700
Os.20425.2.S1_at--255--3092Chr08:20282432..20282453 (22 bp)
AATAATGCATTTTTTTTTGCCAAAT
LOC_Os08g32920
Os.20425.2.S1_at--764--10271Chr12:14893650..14893674 (25 bp)
TTTGCCAAATAAAGGCTGTGTTTAG
LOC_Os12g25700
Target Sequence 
CTAAGAGTGCCACCCAAAATACCTCTTGTATCACATGAACTTCTTATAGCTGATTTATTCTCGTATTTCAAAGACGCTAC
AGATTAATAATGCATTTTTTTTTGCCAAATAAAGGCTGTGTTTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20425.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis