Browse Element(s) Details


OsAffx.31881.1.S1_at

Description tigr:9640.m02453
TID=OsAffx.31881.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2567010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25660OsAffx.19825.1.S1_x_at11/1112+14863480..14865154Cytochrome P450 family protein, expressed
LOC_Os12g25670OsAffx.31881.1.S1_at10/1112+14871873..14872340hypothetical protein
LOC_Os12g25680OsAffx.19826.1.S1_at10/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25680OsAffx.19826.2.S1_at1/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25690Os.10473.1.S1_at11/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25690Os.20425.2.S1_x_at1/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.1.S1_at11/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_x_at10/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.20425.2.S1_at7/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25700Os.10473.1.S1_at1/1112+14890511..14893712UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25710Os.6059.1.S1_at11/1112+14894490..14902028Bifunctional aminoacyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31881.1.S1_at--159--7071Chr12:14871819..14871843 (25 bp)
GTAATTCATATTAGCTCCCAGTCCT
NONE
OsAffx.31881.1.S1_at--957--232Chr12:14871887..14871911 (25 bp)
ATATAATCCCACTGTTGGTGCAAAC
LOC_Os12g25670
OsAffx.31881.1.S1_at--151--2191Chr12:14871970..14871994 (25 bp)
ACAAAAACTTCTGGAGCCCCTCTAG
LOC_Os12g25670
OsAffx.31881.1.S1_at--617--3651Chr12:14871989..14872013 (25 bp)
CTCTAGTCCCATCATCGAAGGTTAT
LOC_Os12g25670
OsAffx.31881.1.S1_at--669--6951Chr12:14872024..14872048 (25 bp)
GTAGAGTGTCGATCCAGCACAATGA
LOC_Os12g25670
OsAffx.31881.1.S1_at--576--5131Chr12:14872040..14872064 (25 bp)
GCACAATGATGTCGAAGCTATCCTC
LOC_Os12g25670
OsAffx.31881.1.S1_at--716--4871Chr12:14872056..14872080 (25 bp)
GCTATCCTCGACTTCAATGTTTTGA
LOC_Os12g25670
OsAffx.31881.1.S1_at--1042--10191Chr12:14872089..14872113 (25 bp)
TATTTCGATCTTTTCGTTGGCCATC
LOC_Os12g25670
OsAffx.31881.1.S1_at--899--4951Chr12:14872142..14872166 (25 bp)
GCATACCGGAGTCCTTGACATTAAA
LOC_Os12g25670
OsAffx.31881.1.S1_at--566--6231Chr12:14872217..14872241 (25 bp)
GATGGAACCCATTCCTGATTCCGAG
LOC_Os12g25670
OsAffx.31881.1.S1_at--417--5331Chr12:14872251..14872275 (25 bp)
GAAGTGATGGCTATCTCTCCTTTTG
LOC_Os12g25670
Target Sequence 
GTAATTCATATTAGCTCCCAGTCCTTAACTATTCCATATCTGATGAGAGAGGCCATGGTGCAAACTCTATATAATCCCAC
TGTTGGTGCAAACATTATGTCTACAACCTTTGCATTAAATTGCTTCGGGGGCGAACTATTTGCGCCAACAAACAAAAACT
TCTGGAGCCCCTCTAGTCCCATCATCGAAGGTTATGGGATTCTTCGTAGAGTGTCGATCCAGCACAATGATGTCGAAGCT
ATCCTCGACTTCAATGTTTTGAAAGTCTCTTATTTCGATCTTTTCGTTGGCCATCCCATAGAGAAACTTCTCCTTGATGT
GCCGCATACCGGAGTCCTTGACATTAAACTCGGGAAAATGGTGTTTTTCATTTTGATCTTGCGATTGAAAAATTCTATGA
TGGAACCCATTCCTGATTCCGAGCCAATTGAGGAAGTGATGGCTATCTCTCCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis