Browse Element(s) Details


OsAffx.19825.1.S1_x_at

Description tigr:9640.m02452
TID=OsAffx.19825.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cytochrome P450-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2566011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25640OsAffx.19823.1.S1_at11/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25640Os.9939.1.S1_at11/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25640Os.50043.1.A1_at1/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25650OsAffx.19824.1.S1_at10/1112+14844949..14846006hypothetical protein
LOC_Os12g25660OsAffx.19825.1.S1_x_at11/1112+14863480..14865154Cytochrome P450 family protein, expressed
LOC_Os12g25670OsAffx.31881.1.S1_at10/1112+14871873..14872340hypothetical protein
LOC_Os12g25680OsAffx.19826.1.S1_at10/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25680OsAffx.19826.2.S1_at1/1112+14880538..14882879Papain family cysteine protease containing protein
LOC_Os12g25690Os.10473.1.S1_at11/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed
LOC_Os12g25690Os.20425.2.S1_x_at1/1112+14885249..14887809UDP-glucose 6-dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19825.1.S1_x_at--582--1031Chr12:14864038..14864062 (25 bp)
AGGTCGACGCGTGCATGGGCGACGG
LOC_Os12g25660
OsAffx.19825.1.S1_x_at--332--8371Chr12:14863991..14864015 (25 bp)
GGCGTGGACCTCGAGGGCTCGCGCA
LOC_Os12g25660
OsAffx.19825.1.S1_x_at--852--4811Chr12:14863944..14863968 (25 bp)
GCTCTGCGAGACGATGCGGCTGTAC
LOC_Os12g25660
OsAffx.19825.1.S1_x_at--195--4271Chr12:14863834..14863858 (25 bp)
CCTACTTCCCCTACGGGATGGGCAG
LOC_Os12g25660
OsAffx.19825.1.S1_x_at--1035--3631Chr12:14863830..14863854 (25 bp)
CTTCCCCTACGGGATGGGCAGGATG
LOC_Os12g25660
OsAffx.19825.1.S1_x_at--380--10651Chr12:14863829..14863853 (25 bp)
TTCCCCTACGGGATGGGCAGGATGG
LOC_Os12g25660
OsAffx.19825.1.S1_x_at--472--3431Chr12:14863658..14863682 (25 bp)
CAGATGAAGTTCGTGGCCAGCGCCG
LOC_Os12g25660
OsAffx.19825.1.S1_x_at--916--3271Chr12:14863517..14863541 (25 bp)
CAAAATGGCACGTGCGAGACATGAA
LOC_Os12g25660
OsAffx.19825.1.S1_x_at--4--2451Chr12:14863516..14863540 (25 bp)
AAAATGGCACGTGCGAGACATGAAG
LOC_Os12g25660
OsAffx.19825.1.S1_x_at--746--2951Chr12:14863514..14863538 (25 bp)
AATGGCACGTGCGAGACATGAAGCC
LOC_Os12g25660
OsAffx.19825.1.S1_x_at--233--8491Chr12:14863512..14863536 (25 bp)
TGGCACGTGCGAGACATGAAGCCAA
LOC_Os12g25660
Target Sequence 
AGGTCGACGCGTGCATGGGCGACGGCGGCGATGGCGGTGGCCTCGCCGGCGTGGACCTCGAGGGCTCGCGCAGGGCGCGG
GTGCTCCACGCCGCGCTCTGCGAGACGATGCGGCTGTACCCGCCGGTGGCGTGGGACTCGAAGCACGCGGCGGAGGACGA
CGTGCTCCCGGACGGCACGCGCGTGGGGCGCGGCGACCGCGTCACCTACTTCCCCTACGGGATGGGCAGGATGGAGGCCA
TCTGGGGCGCCGACGCCGGCGAGTTCAGGCCGGGGAGGTGGCTTGCGGCGGCGGCGGCGGGCGGCGGCGTGTCGCCGTTC
AAGTACCCGGTGTTCCAGGGCGGGCCGCGGACGTGCCTCGGCAAGGACATGGCGTTCGTGCAGATGAAGTTCGTGGCCAG
CGCCGTGCTCCGGCGGTTCGAGCTCCGCCCCGTGGCGCCGGAGGGCTCGCCGGAGTTCGTGCCGCTGCTCACCGCGCACA
TGGCCGGCGGCCTCAAGGTGACGGTGAGGAGGAGGCAGCGGCAAAATGGCACGTGCGAGACATGAAGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19825.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis