Browse Element(s) Details


Os.9939.1.S1_at

Description gb:AK073787.1
DB_XREF= gi:32983810
TID=Os.9939.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9939 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033066K13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033066K13, full insert sequence.
FL= gb:AK073787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2564011/11SAP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25600Os.24831.3.S1_s_at11/1112+14814395..14817138retrotransposon protein, putative, unclassified
LOC_Os12g25600Os.24831.1.S1_x_at10/1112+14814395..14817138retrotransposon protein, putative, unclassified
LOC_Os12g25600Os.24831.3.S1_x_at8/1112+14814395..14817138retrotransposon protein, putative, unclassified
LOC_Os12g25610NANA12+14819296..14820579retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g25630Os.8762.1.S1_at11/1112+14824690..14827948Sulfite oxidase, putative, expressed
LOC_Os12g25630Os.7414.1.S1_at1/1112+14824690..14827948Sulfite oxidase, putative, expressed
LOC_Os12g25640OsAffx.19823.1.S1_at11/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25640Os.9939.1.S1_at11/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25640Os.50043.1.A1_at1/1112+14835886..14842772SAP domain containing protein, expressed
LOC_Os12g25650OsAffx.19824.1.S1_at10/1112+14844949..14846006hypothetical protein
LOC_Os12g25660OsAffx.19825.1.S1_x_at11/1112+14863480..14865154Cytochrome P450 family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9939.1.S1_at--294--991Chr12:14836052..14836076 (25 bp)
AGGATGAACTGATCGCCCGCTTAAT
LOC_Os12g25640
Os.9939.1.S1_at--745--8851Chr12:14836043..14836067 (25 bp)
TGATCGCCCGCTTAATTGAGTCCTC
LOC_Os12g25640
Os.9939.1.S1_at--610--4131Chr12:14836035..14836059 (25 bp)
CGCTTAATTGAGTCCTCGGAGTGAT
LOC_Os12g25640
Os.9939.1.S1_at--281--5471Chr12:14836008..14836032 (25 bp)
GAACTGCGATCGGAACCTCATTTTG
LOC_Os12g25640
Os.9939.1.S1_at--236--6391Chr12:14836001..14836025 (25 bp)
GATCGGAACCTCATTTTGTTGGATG
LOC_Os12g25640
Os.9939.1.S1_at--617--6611Chr12:14835984..14836008 (25 bp)
GTTGGATGTTGTACCGTAGTGACGA
LOC_Os12g25640
Os.9939.1.S1_at--619--8811Chr12:14835978..14836002 (25 bp)
TGTTGTACCGTAGTGACGATCATAC
LOC_Os12g25640
Os.9939.1.S1_at--147--2871Chr12:14835946..14835970 (25 bp)
AAGTGAACTTCTATCGCAGACCTCA
LOC_Os12g25640
Os.9939.1.S1_at--557--10151Chr12:14835935..14835959 (25 bp)
TATCGCAGACCTCATGTAAGCATAT
LOC_Os12g25640
Os.9939.1.S1_at--1035--1531Chr12:14835917..14835941 (25 bp)
AGCATATATTTCATACAGTGCCGAA
LOC_Os12g25640
Os.9939.1.S1_at--101--8971Chr12:14835891..14835915 (25 bp)
TGAAAGATCTGGCTGATAGTTTCCA
LOC_Os12g25640
Target Sequence 
AGGATGAACTGATCGCCCGCTTAATTGAGTCCTCGGAGTGATNTGAACTGCGATCGGAACCTCATTTTGTTGGATGTTGT
ACCGTAGTGACGATCATACNCCATGCAAGTGAACTTCTATCGCAGACCTCATGTAAGCATATATTTCATACAGTGCCGAA
ATGAAAGATCTGGCTGATAGTTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis