Browse Element(s) Details


Os.7414.1.S1_at

Description gb:AK061139.1
DB_XREF= gi:32971157
TID=Os.7414.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-208-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-208-B08, full insert sequence.
FL= gb:AK061139.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2380010/11flavin-containing monooxygenase family protein, putative, expressed
LOC_Os12g256301/11Sulfite oxidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23760OsAffx.15585.1.S1_at11/116+13882251..13883185Acyl-coenzyme A oxidase 4, peroxisomal, putative
LOC_Os06g23770OsAffx.27794.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.2.S1_x_at2/116+13884411..13887924expressed protein
LOC_Os06g23780OsAffx.15586.1.S1_at10/116+13891472..13896686Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os06g23790NANA6+13900302..13900942expressed protein
LOC_Os06g23800OsAffx.16039.2.S1_at10/116+13904083..13908019flavin-containing monooxygenase family protein, putative, expressed
LOC_Os06g23800Os.7414.1.S1_at10/116+13904083..13908019flavin-containing monooxygenase family protein, putative, expressed
LOC_Os06g23810OsAffx.15588.1.S1_at11/116+13914102..13914752hypothetical protein
LOC_Os06g23820NANA6+13922592..13924427retrotransposon protein, putative, unclassified
LOC_Os06g23830Os.28943.1.S1_x_at3/116+13924577..13925824retrotransposon protein, putative, unclassified
LOC_Os06g23840NANA6+13926446..13931297retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006790biological_processsulfur metabolism
GO:0009416biological_processresponse to light stimulus
GO:0042128biological_processnitrate assimilation
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0004497molecular_functionmonooxygenase activity
GO:0008134molecular_functiontranscription factor binding
GO:0008482molecular_functionsulfite oxidase activity
GO:0008940molecular_functionnitrate reductase activity
GO:0009703molecular_functionnitrate reductase (NADH) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7414.1.S1_at--1140--2632Chr06:13905471..13905592 (25 bp)
AACCTTGTGCTAGCTACTATGTGAC
LOC_Os06g23800
Os.7414.1.S1_at--326--9212Chr12:14827103..14827220 (25 bp)
TGCCACTCTGCAGGGAACAGGAGGA
LOC_Os12g25630
Os.7414.1.S1_at--238--351Chr06:13905118..13905142 (25 bp)
ATAACATGGGATATCTGCGCTCTCG
LOC_Os06g23800
Os.7414.1.S1_at--754--9151NONE
TGCGCTCTCGGCAATGGTGCATCAA
NONE
Os.7414.1.S1_at--1151--8971Chr06:13904387..13904411 (25 bp)
TGAAGTGAGCCTGTACCTTCCAATT
LOC_Os06g23800
Os.7414.1.S1_at--834--9972Chr06:13904374..13904398 (25 bp)
TACCTTCCAATTCGATGCTTTTCAG
LOC_Os06g23800
Os.7414.1.S1_at--1080--6332Chr06:13904361..13904385 (25 bp)
GATGCTTTTCAGGATATTTGCCAGC
LOC_Os06g23800
Os.7414.1.S1_at--681--8451Chr06:13904309..13904333 (25 bp)
GGCCAAGTCCAGATAATGTAGTTAT
LOC_Os06g23800
Os.7414.1.S1_at--29--9992Chr06:13904291..13904315 (25 bp)
TAGTTATTTTAGCATCCCCTTTTCT
LOC_Os06g23800
Os.7414.1.S1_at--56--10432Chr06:13904257..13904281 (25 bp)
TTATATGTTCCATCTTTGGTGTCAT
LOC_Os06g23800
Os.7414.1.S1_at--303--10652Chr06:13904209..13904233 (25 bp)
TTCCCACAATTCCTAGCTGAGCTAT
LOC_Os06g23800
Target Sequence 
AACCTTGTGCTAGCTACTATGTGACCATTGGCACTCTGATAGACAGGCCAGCCAAGCTTTCTCTGGATGACATCAAGCGA
GGTTGGNNNNNNNNANNNNNNGAAGCGGCCCAAGTACAATGTCACTGCCACTCTGCAGGGAACAGGAGGACCGAAATAAG
CAAGAGTAGGAAGGTGAGGGGCATAACATGGGATATCTGCGCTCTCGGCAATGGTGCATCAATATATCAAAATATACATG
TGAACTTTTGATATGGATGAAGTGAGCCTGTACCTTCCAATTCGATGCTTTTCAGGATATTTGCCAGCAACAAGATGTAT
ACAATATATAAATCTGGCCAAGTCCAGATAATGTAGTTATTTTAGCATCCCCTTTTCTTATAGACCATTATATGTTCCAT
CTTTGGTGTCATTTCAAATTTGTATGTATGCACTATTCCCACAATTCCTAGCTGAGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7414.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis