Browse Element(s) Details


OsAffx.15586.1.S1_at

Description tigr:9634.m02346
TID=OsAffx.15586.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to acyl-CoA dehydrogenase (EC 1.3.99.3) (validated) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2378010/11Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23730OsAffx.8326.1.S1_x_at1/116+13864855..13868093Transposable element protein, putative, Retrotrans_gag
LOC_Os06g23740OsAffx.27792.1.S1_at11/116+13870664..13872424hypothetical protein
LOC_Os06g23750OsAffx.27793.1.S1_at11/116+13876623..13877189hypothetical protein
LOC_Os06g23760OsAffx.15585.1.S1_at11/116+13882251..13883185Acyl-coenzyme A oxidase 4, peroxisomal, putative
LOC_Os06g23770OsAffx.27794.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.2.S1_x_at2/116+13884411..13887924expressed protein
LOC_Os06g23780OsAffx.15586.1.S1_at10/116+13891472..13896686Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed
LOC_Os06g23790NANA6+13900302..13900942expressed protein
LOC_Os06g23800OsAffx.16039.2.S1_at10/116+13904083..13908019flavin-containing monooxygenase family protein, putative, expressed
LOC_Os06g23800Os.7414.1.S1_at10/116+13904083..13908019flavin-containing monooxygenase family protein, putative, expressed
LOC_Os06g23810OsAffx.15588.1.S1_at11/116+13914102..13914752hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006552biological_processleucine catabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0046459biological_processshort-chain fatty acid metabolism
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0005777cellular_componentperoxisome
GO:0003997molecular_functionacyl-CoA oxidase activity
GO:0008470molecular_functionisovaleryl-CoA dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15586.1.S1_at--567--8471Chr06:13894747..13894771 (25 bp)
TGGCGTCTCTACGAGCTGCATGACT
LOC_Os06g23780
OsAffx.15586.1.S1_at--378--5671NONE
GACTTCCACGTTGGCAAGGCGTTCT
NONE
OsAffx.15586.1.S1_at--65--2951Chr06:13896272..13896295 (24 bp)
AAGGCGTTCTGCGACATGGAGTCCT
LOC_Os06g23780
OsAffx.15586.1.S1_at--656--3491Chr06:13896285..13896309 (25 bp)
CATGGAGTCCTTATACACGTACGAG
LOC_Os06g23780
OsAffx.15586.1.S1_at--896--5331Chr06:13896319..13896343 (25 bp)
GAAGTCAATGCACTCATCGTTGCTA
LOC_Os06g23780
OsAffx.15586.1.S1_at--857--4851Chr06:13896340..13896364 (25 bp)
GCTAGAGACATCACTGGCATCGCCA
LOC_Os06g23780
OsAffx.15586.1.S1_at--477--10051Chr06:13896388..13896412 (25 bp)
TAGTTCCTGTGCACACCAAGCAAAT
LOC_Os06g23780
OsAffx.15586.1.S1_at--348--8571Chr06:13896474..13896498 (25 bp)
TGGTTTCACCATCTTTTTCGAACGT
LOC_Os06g23780
OsAffx.15586.1.S1_at--771--8991Chr06:13896514..13896538 (25 bp)
TGAAGAAGTTCCTTGCCTGTTCTCG
LOC_Os06g23780
OsAffx.15586.1.S1_at--768--1171Chr06:13896569..13896593 (25 bp)
AGTACCGCTACTTCAGTTATCACTT
LOC_Os06g23780
OsAffx.15586.1.S1_at--492--10171Chr06:13896586..13896610 (25 bp)
TATCACTTGTGAGCTTTCTGGACAT
LOC_Os06g23780
Target Sequence 
TGGCGTCTCTACGAGCTGCATGACTCCGGCAGGATGACCACCGGCCAGGCCAGCTTAGGGAAGGCATGGATCACAAAGAA
GGCGCGGGAGACTGTGGCCTTGGGCAGGGAGTTGCTCGGTGGCAACGGCATCGTCACCGACTTCCACGTTGGCAAGGCGT
TCTGCGACATGGAGTCCTTATACACGTACGAGGGCAGCTATGAAGTCAATGCACTCATCGTTGCTAGAGACATCACTGGC
ATCGCCAGCATCAGGCCGGCTAGCCGGCTCTAGTTCCTGTGCACACCAAGCAAATGAATAAAACCTAACTAGTGTATATC
ACAAAACGTCAAATTAACTGCAGTTTGTAAGGTCATTGGTTTCACCATCTTTTTCGAACGTTCGTTTTGTAGTATATGAA
GAAGTTCCTTGCCTGTTCTCGCAATATATGCACTCGTTGGTATATATACACAGTACCGCTACTTCAGTTATCACTTGTGA
GCTTTCTGGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis