Browse Element(s) Details


OsAffx.27792.1.S1_at

Description tigr:9634.m02342
TID=OsAffx.27792.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2374011/11hypothetical protein
LOC_Os06g091101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23700OsAffx.19542.3.S1_x_at6/116+13844396..13849667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g23700OsAffx.21754.1.S1_x_at2/116+13844396..13849667retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g23710OsAffx.15583.1.S1_at8/116+13853886..13859640hypothetical protein
LOC_Os06g23710OsAffx.27828.1.S1_at3/116+13853886..13859640hypothetical protein
LOC_Os06g23720NANA6+13862323..13864047hypothetical protein
LOC_Os06g23730OsAffx.8326.1.S1_x_at1/116+13864855..13868093Transposable element protein, putative, Retrotrans_gag
LOC_Os06g23740OsAffx.27792.1.S1_at11/116+13870664..13872424hypothetical protein
LOC_Os06g23750OsAffx.27793.1.S1_at11/116+13876623..13877189hypothetical protein
LOC_Os06g23760OsAffx.15585.1.S1_at11/116+13882251..13883185Acyl-coenzyme A oxidase 4, peroxisomal, putative
LOC_Os06g23770OsAffx.27794.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.1.S1_at11/116+13884411..13887924expressed protein
LOC_Os06g23770Os.22618.2.S1_x_at2/116+13884411..13887924expressed protein
LOC_Os06g23780OsAffx.15586.1.S1_at10/116+13891472..13896686Acyl-coenzyme A oxidase 4, peroxisomal, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27792.1.S1_at--2--7612Chr06:13870750..13870774 (25 bp)
GGGCAACGGTGATGTCTTTGACGCT
LOC_Os06g23740
OsAffx.27792.1.S1_at--21--3691Chr06:13870765..13870789 (25 bp)
CTTTGACGCTATGGCCTTCTTGAAG
LOC_Os06g23740
OsAffx.27792.1.S1_at--1004--7311Chr06:13871014..13871038 (25 bp)
GTGCTAGTGTCTTCTTCAATGTGTT
LOC_Os06g23740
OsAffx.27792.1.S1_at--495--9132Chr06:13872145..13872169 (25 bp)
TGCCGGGTTCCCAAGCGGTACCGAG
LOC_Os06g23740
OsAffx.27792.1.S1_at--238--4671Chr06:13872159..13872183 (25 bp)
GCGGTACCGAGGAAGTGGCACATAT
LOC_Os06g23740
OsAffx.27792.1.S1_at--314--7291Chr06:13872198..13872222 (25 bp)
GTGCTAGTTCCAAAACCATGACCTT
LOC_Os06g23740
OsAffx.27792.1.S1_at--249--2372Chr06:13872210..13872234 (25 bp)
AAACCATGACCTTTGAGGCTCCAGG
LOC_Os06g23740
OsAffx.27792.1.S1_at--498--10751Chr06:13872222..13872246 (25 bp)
TTGAGGCTCCAGGTATTCCAAAAAA
LOC_Os06g23740
OsAffx.27792.1.S1_at--835--2291Chr06:13872246..13872270 (25 bp)
AAAGGCATCGAGTAGCTTCCCTTCA
LOC_Os06g23740
OsAffx.27792.1.S1_at--609--3212Chr06:13872331..13872355 (25 bp)
CAAGAATATTCTTCCCAACCACCGG
LOC_Os06g23740
OsAffx.27792.1.S1_at--1014--1772Chr06:13872351..13872375 (25 bp)
ACCGGGAACCATCGAAGCTACTCAT
LOC_Os06g23740
Target Sequence 
GGGCAACGGTGATGTCTTTGACGCTATGGCCTTCTTGAAGGCATTGTCTAGGAGCGGCGGTCGGCTTGGTGCTAGTGTCT
TCTTCAATGTGTTGTGTGAGGAGCTACAGCTCGTGGTGGCGGTGCCGGTTGGGAAATCCGGCACCTATGCCGGGTTCCCA
AGCGGTACCGAGGAAGTGGCACATATGTTGGAAATCAAAGGTGCTAGTTCCAAAACCATGACCTTTGAGGCTCCAGGTAT
TCCAAAAAAAAGGCATCGAGTAGCTTCCCTTCACCCCGCCCAGAACACATCAAAGAACATCAAGAACATCCAAGAACACA
TCAACATGAACATCAAGAATATTCTTCCCAACCACCGGGAACCATCGAAGCTACTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis