Browse Element(s) Details


OsAffx.8326.1.S1_x_at

Description gb:NM_195565.1
DB_XREF= gi:37532489
TID=OsAffx.8326.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0034E23.2), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1641011/11hypothetical protein
LOC_Os07g158401/11hypothetical protein
LOC_Os08g281001/11retrotransposon protein, putative, unclassified
LOC_Os12g283201/11hypothetical protein
LOC_Os06g237301/11Transposable element protein, putative, Retrotrans_gag
LOC_Os11g151501/11expressed protein
LOC_Os07g229701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g15370OsAffx.8327.1.S1_at10/1110+7823635..7823927expressed protein
LOC_Os10g15390Os.17285.2.S1_x_at10/1110+7824172..7834913expressed protein
LOC_Os10g15390Os.46706.1.S1_x_at10/1110+7824172..7834913expressed protein
LOC_Os10g16390NANA10+7839603..7843537retrotransposon protein, putative, unclassified
LOC_Os10g16400NANA10+7843889..7844794hypothetical protein
LOC_Os10g16410OsAffx.8326.1.S1_x_at11/1110+7847166..7849598hypothetical protein
LOC_Os10g16410OsAffx.8326.1.S1_at11/1110+7847166..7849598hypothetical protein
LOC_Os10g16419OsAffx.8598.1.S1_at1/1110+7855526..7857188NA
LOC_Os10g16430OsAffx.20576.1.S1_at11/1110+7860945..7861900hypothetical protein
LOC_Os10g16440Os.3300.1.S1_s_at9/1110+7862758..7869411CUE domain containing protein, expressed
LOC_Os10g16450NANA10+7873934..7875319retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8326.1.S1_x_at--657--7571Chr10:7847310..7847334 (25 bp)
GGGCGTTCGTTTCTTAGCACTGCAC
LOC_Os10g16410
OsAffx.8326.1.S1_x_at--658--6831Chr10:7847318..7847342 (25 bp)
GTTTCTTAGCACTGCACAAGCCAAC
LOC_Os10g16410
OsAffx.8326.1.S1_x_at--189--6831Chr10:7847402..7847426 (25 bp)
GTTTCAGCCAAGGACCAAAAAATGC
LOC_Os10g16410
OsAffx.8326.1.S1_x_at--774--4371Chr10:7847408..7847432 (25 bp)
GCCAAGGACCAAAAAATGCTCCATG
LOC_Os10g16410
OsAffx.8326.1.S1_x_at--79--2751Chr10:7847493..7847546 (25 bp)
AAGACGGTCAGCCTGGAAACAACGT
LOC_Os10g16410
OsAffx.8326.1.S1_x_at--357--8191Chr10:7847565..7847589 (25 bp)
GGAAGGTGCCGGTAAAACCTAGCAT
LOC_Os10g16410
OsAffx.8326.1.S1_x_at--477--2631Chr10:7847580..7847604 (25 bp)
AACCTAGCATACCGGCCAAAAAGCT
LOC_Os10g16410
OsAffx.8326.1.S1_x_at--768--6091Chr10:7848395..7848419 (25 bp)
GAGTCTAGTGCTTGTTCATCAGCCG
LOC_Os10g16410
OsAffx.8326.1.S1_x_at--222--4939Chr11:8532362..8532382 (21 bp)
GCTTGTTCATCAGCCGATGTCTCGA
LOC_Os11g15150
OsAffx.8326.1.S1_x_at--517--8551Chr10:7848429..7848453 (25 bp)
TGGAGGATGCCGACGTTCCACAACG
LOC_Os10g16410
OsAffx.8326.1.S1_x_at--729--9171Chr10:7848436..7848460 (25 bp)
TGCCGACGTTCCACAACGTCTCTTG
LOC_Os10g16410
Target Sequence 
GGGCGTTCGTTTCTTAGCACTGCACAAGCCAACATTGACGTGGGAACGGGAAGTATCCATTTCCATATCAACGGTATGGA
AGAGAAGTTTGAGTTTCAGCCAAGGACCAAAAAATGCTCCATGGTCAGAATTAAATACGGGCCAAACCCGCAAAACATCC
AAGAGGTCAAAGTGGAGCCACCCAAGACGGTCAGCCTGGAAACAACGTTTCCCAGGAACCGTTATTGGAAGGTGCCGGTA
AAACCTAGCATACCGGCCAAAAAGCTAGAGCAGCCGGCTCAGAAGAAGCTGTCTCCCGCACCAAAACCAAATAAGGGATC
CGGCTCTTCATCAAGTCATCATGACGAGTCTAGTGCTTGTTCATCAGCCGATGTCTCGATGGAGGATGCCGACGTTCCAC
AACGTCTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8326.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis