Browse Element(s) Details


OsAffx.8598.1.S1_at

Description gb:XM_354510.1
DB_XREF= gi:35192038
TID=OsAffx.8598.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g356802/11hypothetical protein
LOC_Os10g164191/11
LOC_Os09g313191/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35660NANA8+22358234..22358878hypothetical protein
LOC_Os08g35670Os.55050.1.S1_at11/118+22359906..22364943Response regulator receiver domain containing protein, expressed
LOC_Os08g35680OsAffx.29540.1.S1_at11/118+22373653..22377974hypothetical protein
LOC_Os08g35680OsAffx.8598.1.S1_at2/118+22373653..22377974hypothetical protein
LOC_Os08g35680OsAffx.13875.1.S1_at1/118+22373653..22377974hypothetical protein
LOC_Os08g35690Os.47463.1.S1_x_at3/118+22382288..22387267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35690Os.14491.2.S1_x_at2/118+22382288..22387267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35700Os.50552.1.S1_at10/118+22389525..22396040Leucine Rich Repeat family protein, expressed
LOC_Os08g35710Os.28002.1.S1_at10/118+22397201..22399637expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8598.1.S1_at--282--4073Chr07:26047379..26047403 (25 bp)
CGAGTGTGATTTCGCTTCTACCCGG
NONE
OsAffx.8598.1.S1_at--974--92331Chr12:26110935..26111096 (25 bp)
TCCTTCGCCGCCCTATAAATAGGAC
NONE
OsAffx.8598.1.S1_at--380--3553Chr07:26047767..26047791 (25 bp)
CATCATCAACAATCAAAGCCCTACA
NONE
OsAffx.8598.1.S1_at--1091--93930Chr11:16868270..16868555 (25 bp)
TCGGTCGAACACCTTATTCCATTTT
NONE
OsAffx.8598.1.S1_at--311--33717Chr12:26111205..26111482 (25 bp)
CACCTTATTCCATTTTAGCAATCCC
NONE
OsAffx.8598.1.S1_at--1154--100111Chr12:26111473..26111496 (24 bp)
TAGCAATCCCTTTGCACTATCATGT
NONE
OsAffx.8598.1.S1_at--1095--10734Chr07:26048132..26048156 (25 bp)
TTGCACTATCATGTCACCCTCTGAG
NONE
OsAffx.8598.1.S1_at--844--37718Chr10:10768300..10768324 (25 bp)
CTCTGAGCTGCCGACGTGAGCACGG
NONE
OsAffx.8598.1.S1_at--29--1951Chr07:26048171..26048195 (25 bp)
ACGGCTGCCGCCTATGGAGGCGCTC
NONE
OsAffx.8598.1.S1_at--645--10671Chr07:26048218..26048365 (25 bp)
TTGCCAAAGCTGCTAGGCCGTCCAC
NONE
OsAffx.8598.1.S1_at--155--895Chr10:7855697..7855718 (22 bp)
AGGCCGTCCACGCATCAAATTAACT
LOC_Os10g16419
Target Sequence 
CGAGTGTGATTTCGCTTCTACCCGGGGTGAACCGCGCCAATTCTTGCCGCACGGTTGGATTGGAGATAGATGGTGGTATC
CCCTCTCATAATTCAAACCATTCACCCCCAAGCCGGCCGTTTTCACCCTCGCCGCCGCCGCGCGTAGCGCCCGGATTGGC
GCCAACACGTCGCCAGCCGAATTCACACGCGGTCAAGCCAATCCTTCGCCGCCCTATAAATAGGACCCCAATCCCTTCCT
TGTCCATCATCCATCATCAACAATCAAAGCCCTACAACCCCAAAGCTCTGCTTCGCCAACCCACTCCATTAACCACCATC
GCCCGTCGGTCGAACACCTTATTCCATTTTAGCAATCCCTTTGCACTATCATGTCACCCTCTGAGCTGCCGACGTGAGCA
CGGCTGCCGCCTATGGAGGCGCTCGTCGGCAACTATGCTCCGCGCCTTGCCAAAGCTGCTAGGCCGTCCACGCATCAAAT
TAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis