Browse Element(s) Details


Os.28002.1.S1_at

Description gb:AK101386.1
DB_XREF= gi:32986595
TID=Os.28002.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28002 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033036F14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033036F14, full insert sequence.
FL= gb:AK101386.1 gb:AK060409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3571010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35680OsAffx.29540.1.S1_at11/118+22373653..22377974hypothetical protein
LOC_Os08g35680OsAffx.8598.1.S1_at2/118+22373653..22377974hypothetical protein
LOC_Os08g35680OsAffx.13875.1.S1_at1/118+22373653..22377974hypothetical protein
LOC_Os08g35690Os.47463.1.S1_x_at3/118+22382288..22387267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35690Os.14491.2.S1_x_at2/118+22382288..22387267transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35700Os.50552.1.S1_at10/118+22389525..22396040Leucine Rich Repeat family protein, expressed
LOC_Os08g35710Os.28002.1.S1_at10/118+22397201..22399637expressed protein
LOC_Os08g35720Os.8451.1.S1_at3/118+22404769..22408471transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g35730OsAffx.17349.1.S1_at11/118+22410580..22411410hypothetical protein
LOC_Os08g35740Os.12373.1.S1_at11/118+22414347..2241788512-oxophytodienoate reductase 3, putative, expressed
LOC_Os08g35750OsAffx.29541.1.S1_at11/118+22420499..22421158Germin-like protein 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28002.1.S1_at--773--8071Chr08:22397728..22397752 (25 bp)
GGAGCAGCTGTCAGTGGCACTTCTG
LOC_Os08g35710
Os.28002.1.S1_at--1076--4231Chr08:22397695..22397719 (25 bp)
CCGTACTTCTGGTGTGTCTTGTTCA
LOC_Os08g35710
Os.28002.1.S1_at--1031--7131Chr08:22397680..22397704 (25 bp)
GTCTTGTTCAGCAGCGGGAAGCCAA
LOC_Os08g35710
Os.28002.1.S1_at--403--4391Chr08:22397660..22397684 (25 bp)
GCCAACCACCAGCTTCAAGGTAGAT
LOC_Os08g35710
Os.28002.1.S1_at--421--2851Chr08:22397623..22397647 (25 bp)
AAGTCTGTCCGTCCAGGATGCTTCA
LOC_Os08g35710
Os.28002.1.S1_at--545--811Chr08:22397578..22397602 (25 bp)
ATGGGTGCCAATGCTGCAGTTTCGA
LOC_Os08g35710
Os.28002.1.S1_at--568--1191Chr08:22397561..22397585 (25 bp)
AGTTTCGATCGGTGCAGGTACATGG
LOC_Os08g35710
Os.28002.1.S1_at--354--7031Chr08:22397544..22397568 (25 bp)
GTACATGGAGACTGGTGGCTGCACT
LOC_Os08g35710
Os.28002.1.S1_at--235--791Chr08:22397473..22397497 (25 bp)
ATGTGTTGTTGCACCATTCTTTTGC
LOC_Os08g35710
Os.28002.1.S1_at--759--7331Chr08:22397301..22397325 (25 bp)
GTGCAGGCTGTTCATCTGTTGTATT
LOC_Os08g35710
Os.28002.1.S1_at--102--10591Chr08:22397060..22397209 (25 bp)
TTCTGCAGCAAGTGCCCTGGTTGTA
NONE
Target Sequence 
GGAGCAGCTGTCAGTGGCACTTCTGGCNGCGGGCCGTACTTCTGGTGTGTCTTGTTCAGCAGCGGGAAGCCAACCACCAG
CTTCAAGGTAGATGGTGGAGTGCCCAAGTCTGTCCGTCCAGGATGCTTCAGTGGCAACAACGACGATTGCATGGGTGCCA
ATGCTGCAGTTTCGATCGGTGCAGGTACATGGAGACTGGTGGCTGCACTACTTTTCTCCGCGGCTTGTGTTTTCGCTTTG
TGAGTTTGAGTAGAAATGTGTTGTTGCACCATTCTTTTGCTCGTCTTGGACCTGGTTTGGAATNTNTTGCTTCTGAAAAC
CAGTAGAACACTCTTGTTGCTGCCGCACTGTTCTTTTCCTNTTCTNTAGCAGCTGAACTCTGTCAGGATTAAAGAGCATT
GTTTTCTGCACTTATAGATGATGAATTACCTGTGCAGGCTGTTCATCTGTTGTATTTATAGTATTTATCTATTCAAATGT
ACTCTTTGGAAAATAATTGTGATTGTAAGATCCTTTTGATCACTCNNNGTCTATTNCCCATCGGANGCGCTTTCTGCAGC
AAGTGCCCTGGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis