Browse Element(s) Details


Os.8451.1.S1_at

Description gb:AK067408.1
DB_XREF= gi:32977426
TID=Os.8451.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102F13, full insert sequence.
FL= gb:AK067408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g074403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g357203/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07420NANA9+3693945..3700327retrotransposon protein, putative, unclassified
LOC_Os09g07430OsAffx.1194.1.S1_at1/119+3709692..3714437retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07430OsAffx.22629.1.S1_at1/119+3709692..3714437retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07430Os.47004.1.S1_at1/119+3709692..3714437retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07430OsAffx.25917.1.S1_at1/119+3709692..3714437retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07440Os.8451.1.S1_at3/119+3718390..3723265transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07450NANA9+3725392..3729896Flavonol synthase, putative
LOC_Os09g07460Os.28064.1.S1_at11/119+3731450..3733886Kelch motif family protein, expressed
LOC_Os09g07470OsAffx.29746.1.S1_at11/119+3741150..3741637hypothetical protein
LOC_Os09g07480Os.51740.1.S1_at11/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480OsAffx.6194.1.S1_at10/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480Os.54271.1.S1_at1/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480OsAffx.29386.1.S1_at1/119+3744713..3748009integral membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8451.1.S1_at--508--52Chr08:22408205..22408229 (25 bp)
ATTGATGTGCTGATCACTAGTACCT
LOC_Os08g35720
Os.8451.1.S1_at--164--3012Chr08:22408343..22408366 (24 bp)
AATGAGAGTTGGACTACACCTTTGC
LOC_Os08g35720
Os.8451.1.S1_at--500--5212Chr08:22408373..22408397 (25 bp)
GAATTTCAAGCTCATCGCAGTTTTC
LOC_Os08g35720
Os.8451.1.S1_at--373--8612Chr08:22408450..22408474 (25 bp)
TGGTGATGATACAGGCCTCTAGTGA
NONE
Os.8451.1.S1_at--15--6312Chr08:22408514..22408538 (25 bp)
GATGAGGGTCTATATTTTGCTGCAC
NONE
Os.8451.1.S1_at--924--10832Chr08:22408543..22408567 (25 bp)
TTGGTCATGCAATTGCCGCACTATA
NONE
Os.8451.1.S1_at--347--9132Chr08:22408623..22408642 (20 bp)
TGCTGTGACATGCTAATCTGCTAGT
NONE
Os.8451.1.S1_at--710--1112Chr08:22408643..22408667 (25 bp)
AGTGTTGCTTTCTAACTTTTGGACA
NONE
Os.8451.1.S1_at--216--6652Chr08:22408669..22408693 (25 bp)
GTTGATAACCCTAGCTTTGTGGCCC
NONE
Os.8451.1.S1_at--460--10812Chr08:22408685..22408709 (25 bp)
TTGTGGCCCTTTTCTTTTGTCTTGT
NONE
Os.8451.1.S1_at--42--9812Chr08:22408711..22408735 (25 bp)
TAACTCGTGGCATTACTGGCTAGAA
NONE
Target Sequence 
ATTGATGTGCTGATCACTAGTACCTTGGTTGGAATCAAAGATAACCTTGCCAAACCAATACAGACTGCAGCCCCTCAAGA
TCCAAATGCCCCTCTATGGGACATGCTCAAGAAGATTGCCTTAGAACCTGAAGATAAAATGAGAGTTGGACTACACCTTT
GCAAGCCAGAATTTCAAGCTCATCGCAGTTTTCTTATTAGCATGGGTCAAGAATATCTTGAACGTTGGGTTTACAAGTTC
TTATCTGGTGATGATACAGGCCTCTAGTGAGCTATAGGTGCATATTGGTTGCAAAAGCTAATCGTGGTTGATGAGGGTCT
ATATTTTGCTGCACCCTTTTGGTCATGCAATTGCCGCACTATATATGTGTTTAGACAATTGCTAAATATTAACATAGATA
CTATGATGATGCATGCTGTGACATGCTAATCTGCTAGTAGTGTTGCTTTCTAACTTTTGGACAAGTTGATAACCCTAGCT
TTGTGGCCCTTTTCTTTTGTCTTGTTTAACTCGTGGCATTACTGGCTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis