Browse Element(s) Details


Os.28064.1.S1_at

Description gb:AK072805.1
DB_XREF= gi:32982828
TID=Os.28064.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28064 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023138D22, full insert sequence.
FL= gb:AK072805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0746011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07430OsAffx.1194.1.S1_at1/119+3709692..3714437retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07430OsAffx.22629.1.S1_at1/119+3709692..3714437retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07430Os.47004.1.S1_at1/119+3709692..3714437retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07430OsAffx.25917.1.S1_at1/119+3709692..3714437retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g07440Os.8451.1.S1_at3/119+3718390..3723265transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g07450NANA9+3725392..3729896Flavonol synthase, putative
LOC_Os09g07460Os.28064.1.S1_at11/119+3731450..3733886Kelch motif family protein, expressed
LOC_Os09g07470OsAffx.29746.1.S1_at11/119+3741150..3741637hypothetical protein
LOC_Os09g07480Os.51740.1.S1_at11/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480OsAffx.6194.1.S1_at10/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480Os.54271.1.S1_at1/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480OsAffx.29386.1.S1_at1/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07490OsAffx.17040.4.S1_at8/119+3749054..3749758expressed protein
LOC_Os09g07500Os.50908.1.S1_at11/119+3750060..3752652expressed protein
LOC_Os09g07510Os.1308.1.S1_at11/119+3756934..3763491Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit A,alpha isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28064.1.S1_at--1001--1611Chr09:3732031..3732055 (25 bp)
AGCTGGACGACGTGCACTGCTACGA
LOC_Os09g07460
Os.28064.1.S1_at--729--5451Chr09:3731679..3731703 (25 bp)
GAACGATCGCCTCGGCGACATCTAC
LOC_Os09g07460
Os.28064.1.S1_at--875--4151Chr09:3731644..3731668 (25 bp)
CGCCGCTGGCTTAATAATTCCTGAA
LOC_Os09g07460
Os.28064.1.S1_at--1021--3071Chr09:3731632..3731656 (25 bp)
AATAATTCCTGAACCGGCGAGCGAC
LOC_Os09g07460
Os.28064.1.S1_at--662--10811Chr09:3731606..3731630 (25 bp)
TTGTCGACCTCCGTCATGCAGGTGT
LOC_Os09g07460
Os.28064.1.S1_at--874--7111Chr09:3731594..3731618 (25 bp)
GTCATGCAGGTGTCCGCGTGCTTCC
LOC_Os09g07460
Os.28064.1.S1_at--61--7331Chr09:3731577..3731601 (25 bp)
GTGCTTCCCTTCTGAGCGTTGGGTA
LOC_Os09g07460
Os.28064.1.S1_at--458--1251Chr09:3731553..3731577 (25 bp)
AGTTGTGTGGTTTGTCACTGTGTTT
LOC_Os09g07460
Os.28064.1.S1_at--85--6631Chr09:3731519..3731543 (25 bp)
GTTGGTATCATGTTATCCTGTGTTG
LOC_Os09g07460
Os.28064.1.S1_at--815--9271Chr09:3731504..3731528 (25 bp)
TCCTGTGTTGTGTAGCTGATGAAAT
LOC_Os09g07460
Os.28064.1.S1_at--901--2971Chr09:3731478..3731502 (25 bp)
AATGTGATGCATTGGTCATTGGTGC
LOC_Os09g07460
Target Sequence 
AGCTGGACGACGTGCACTGCTACGACCCGGGCACGGGCGCGTGGTCCACGGTCGAGACCACCGGCGGCGGCGGCGGCGGC
GACAAGCCGTCCCCGCGCAGCGTGTTCTGTGCCGCGGGGATCGGGAAGCACGTGGTGGTGTTCGGCGGCGAGGTGGACCC
GAGCGACCTGGGGCACCTCGGCGCCGGCAAATTCTCCGCCGAGGCGTTCGCGCTGGACACGGAGACGGGCGCGTGGGCGA
GGCTGGACGACGCGGGCGAGCACCACCCGGGGCCGAGGGGATGGTGCGCGTTCTCGGCGGGGGAGGTGGACGGCCGGCGA
GGGCTGCTGGTGTACGGCGGCAACTCGCCGACGAACGATCGCCTCGGCGACATCTACTTCTTCACTCCGCCGCTGGCTTA
ATAATTCCTGAACCGGCGAGCGACCTTGTCGACCTCCGTCATGCAGGTGTCCGCGTGCTTCCCTTCTGAGCGTTGGGTAG
TTGTGTGGTTTGTCACTGTGTTTGATGTTGGTGTTGGTATCATGTTATCCTGTGTTGTGTAGCTGATGAAATAAATGTGA
TGCATTGGTCATTGGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis