Browse Element(s) Details


Os.1308.1.S1_at

Description gb:AK069757.1
DB_XREF= gi:32979781
TID=Os.1308.1
CNT=56
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.1308 (NCBI UniGene Cluster)
UG_TITLE=MRNA for protein phosphatase 2A regulatory A subunit (RPA1 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023031G02, full insert sequence.
FL= gb:AK069757.1 gb:AK059103.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0751011/11Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit A,alpha isoform, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07460Os.28064.1.S1_at11/119+3731450..3733886Kelch motif family protein, expressed
LOC_Os09g07470OsAffx.29746.1.S1_at11/119+3741150..3741637hypothetical protein
LOC_Os09g07480Os.51740.1.S1_at11/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480OsAffx.6194.1.S1_at10/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480Os.54271.1.S1_at1/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480OsAffx.29386.1.S1_at1/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07490OsAffx.17040.4.S1_at8/119+3749054..3749758expressed protein
LOC_Os09g07500Os.50908.1.S1_at11/119+3750060..3752652expressed protein
LOC_Os09g07510Os.1308.1.S1_at11/119+3756934..3763491Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit A,alpha isoform, putative, expressed
LOC_Os09g07520NANA9+3769533..3769862hypothetical protein
LOC_Os09g07530NANA9+3771215..3773590retrotransposon protein, putative, unclassified
LOC_Os09g07540OsAffx.25778.2.S1_at1/119+3777505..3782048retrotransposon protein, putative, unclassified
LOC_Os09g07540OsAffx.20020.1.S1_x_at1/119+3777505..3782048retrotransposon protein, putative, unclassified
LOC_Os09g07550NANA9+3785706..3786191retrotransposon protein, putative, unclassified
LOC_Os09g07560NANA9+3788336..3788870hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009723biological_processresponse to ethylene stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009789biological_processpositive regulation of abscisic acid mediated signaling
GO:0009926biological_processauxin polar transport
GO:0010119biological_processregulation of stomatal movement
GO:0042325biological_processregulation of phosphorylation
GO:0000159cellular_componentprotein phosphatase type 2A complex
GO:0008601molecular_functionprotein phosphatase type 2A regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1308.1.S1_at--670--1891Chr09:3757408..3757432 (25 bp)
ACGTGAAACCATGCCTCGTTGAACT
LOC_Os09g07510
Os.1308.1.S1_at--311--9151Chr09:3757328..3757352 (25 bp)
TGCGATCAAATCATGATGTCAAGCT
LOC_Os09g07510
Os.1308.1.S1_at--1035--751Chr09:3757313..3757337 (25 bp)
ATGTCAAGCTAACTGTCTTCCTGTC
LOC_Os09g07510
Os.1308.1.S1_at--893--1571Chr09:3757307..3757331 (25 bp)
AGCTAACTGTCTTCCTGTCCAGTAT
LOC_Os09g07510
Os.1308.1.S1_at--198--5491Chr09:3757279..3757303 (25 bp)
GAACTTGATTCTCTTAGTCCAAATT
LOC_Os09g07510
Os.1308.1.S1_at--1059--10271Chr09:3757214..3757238 (25 bp)
TTTCTAGCCCCAGTAACAGACCAAA
LOC_Os09g07510
Os.1308.1.S1_at--767--5591Chr09:3757176..3757200 (25 bp)
GATAATGTATGGCTCCGACCCCTCG
LOC_Os09g07510
Os.1308.1.S1_at--612--7811Chr09:3757008..3757032 (25 bp)
GGTAACGGTGTAGTACTTGCATCGT
LOC_Os09g07510
Os.1308.1.S1_at--110--2071Chr09:3756994..3757018 (25 bp)
ACTTGCATCGTACGAGTTGGCTCTT
LOC_Os09g07510
Os.1308.1.S1_at--517--1251Chr09:3756980..3757004 (25 bp)
AGTTGGCTCTTGATGTGGACACCGA
LOC_Os09g07510
Os.1308.1.S1_at--196--6271Chr09:3756969..3756993 (25 bp)
GATGTGGACACCGATATGTTGATAT
LOC_Os09g07510
Target Sequence 
ACGTGAAACCATGCCTCGTTGAACTCAGTGAGGACCCTGATGTGGATGTAAGATACTATGCAAACCAGGCCCTTCAGGCA
TGCGATCAAATCATGATGTCAAGCTAACTGTCTTCCTGTCCAGTATTTAGAACTTGATTCTCTTAGTCCAAATTTTGGAA
TATTTGTAATTTGCACTTTAGTTTGAAGAGTTCCTTTCTAGCCCCAGTAACAGACCAAACACTTCCCANGATGATAATGT
ATGGCTCCGACCCCTCGTTCTCTGTGTTTGATGTTGATGATGTTGTAATTGAGCAAGATCGGACACATTATTATGTTTGT
TTACATGGTAGTTTTGGGCCTTGGTTTCTGTNNTTTTAATGGATGCCAACACTNCAATGTGATTTTTGACTGTAGCTANN
GGTAACGGTGTAGTACTTGCATCGTACGAGTTGGCTCTTGATGTGGACACCGATATGTTGATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1308.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis