Browse Element(s) Details


Os.50908.1.S1_at

Description gb:AK068062.1
DB_XREF= gi:32978080
TID=Os.50908.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50908 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129F10, full insert sequence.
FL= gb:AK068062.1 gb:AK059394.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0750011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07450NANA9+3725392..3729896Flavonol synthase, putative
LOC_Os09g07460Os.28064.1.S1_at11/119+3731450..3733886Kelch motif family protein, expressed
LOC_Os09g07470OsAffx.29746.1.S1_at11/119+3741150..3741637hypothetical protein
LOC_Os09g07480Os.51740.1.S1_at11/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480OsAffx.6194.1.S1_at10/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480Os.54271.1.S1_at1/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480OsAffx.29386.1.S1_at1/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07490OsAffx.17040.4.S1_at8/119+3749054..3749758expressed protein
LOC_Os09g07500Os.50908.1.S1_at11/119+3750060..3752652expressed protein
LOC_Os09g07510Os.1308.1.S1_at11/119+3756934..3763491Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit A,alpha isoform, putative, expressed
LOC_Os09g07520NANA9+3769533..3769862hypothetical protein
LOC_Os09g07530NANA9+3771215..3773590retrotransposon protein, putative, unclassified
LOC_Os09g07540OsAffx.25778.2.S1_at1/119+3777505..3782048retrotransposon protein, putative, unclassified
LOC_Os09g07540OsAffx.20020.1.S1_x_at1/119+3777505..3782048retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50908.1.S1_at--273--8031Chr09:3750558..3750582 (25 bp)
GGAGTGTGGCAAAACCCTGCTTTAC
LOC_Os09g07500
Os.50908.1.S1_at--77--3171Chr09:3750517..3750541 (25 bp)
AATTGCCGTAGTGAGGCTGCTGCCA
LOC_Os09g07500
Os.50908.1.S1_at--227--6851Chr09:3750485..3750509 (25 bp)
GTTTGCAGATGCTTCAGTTCCACAC
LOC_Os09g07500
Os.50908.1.S1_at--39--8111Chr09:3750455..3750479 (25 bp)
GGACCTGGCTGTCAATTTCTCAGAA
LOC_Os09g07500
Os.50908.1.S1_at--768--2811Chr09:3750432..3750456 (25 bp)
AAGATTCATCTTGAGCTGAGCTTCT
LOC_Os09g07500
Os.50908.1.S1_at--234--4191Chr09:3750375..3750399 (25 bp)
CCCTGCCTAGGGATTACGATGTTCA
LOC_Os09g07500
Os.50908.1.S1_at--9--1191Chr09:3750326..3750350 (25 bp)
AGTAGCTAATTTCTCACCGTGGGTA
LOC_Os09g07500
Os.50908.1.S1_at--33--1771Chr09:3750311..3750335 (25 bp)
ACCGTGGGTAAGTGTCCTCTTCAAG
LOC_Os09g07500
Os.50908.1.S1_at--1137--2651Chr09:3750278..3750302 (25 bp)
AAGCCTTATTACTTGCTCTGGAAGC
LOC_Os09g07500
Os.50908.1.S1_at--331--7071Chr09:3750208..3750232 (25 bp)
GTAAGGGACTGCTGATCTTTTCGTT
LOC_Os09g07500
Os.50908.1.S1_at--63--10271Chr09:3750190..3750214 (25 bp)
TTTCGTTGCGGGATTTACTCATGTG
LOC_Os09g07500
Target Sequence 
GGAGTGTGGCAAAACCCTGCTTTACCAGGTTCAGTGTACACAATTGCCGTAGTGAGGCTGCTGCCAAGAAGGTGTTTGCA
GATGCTTCAGTTCCACACTACTGGGACCTGGCTGTCAATTTCTCAGAAGATTCATCTTGAGCTGAGCTTCTGTTCAGAAC
ATGGAGGNGCCTGCTGTTGAAACCCCTGCCTAGGGATTACGATGTTCAATTCTCATGCAGTAAGTNATGAGTAGTAGCTA
ATTTCTCACCGTGGGTAAGTGTCCTCTTCAAGTTACGTACAAGCCTTATTACTTGCTCTGGAAGCATTTGTGGACTGAGT
AATACTTCGTACTGTCATGAACATACCCTTGTAAGGGACTGCTGATCTTTTCGTTGCGGGATTTACTCATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50908.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis