Browse Element(s) Details


OsAffx.17040.4.S1_at

Description tigr:9637.m00511
TID=OsAffx.17040.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g074908/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07450NANA9+3725392..3729896Flavonol synthase, putative
LOC_Os09g07460Os.28064.1.S1_at11/119+3731450..3733886Kelch motif family protein, expressed
LOC_Os09g07470OsAffx.29746.1.S1_at11/119+3741150..3741637hypothetical protein
LOC_Os09g07480Os.51740.1.S1_at11/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480OsAffx.6194.1.S1_at10/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480Os.54271.1.S1_at1/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07480OsAffx.29386.1.S1_at1/119+3744713..3748009integral membrane protein, putative, expressed
LOC_Os09g07490OsAffx.17040.4.S1_at8/119+3749054..3749758expressed protein
LOC_Os09g07500Os.50908.1.S1_at11/119+3750060..3752652expressed protein
LOC_Os09g07510Os.1308.1.S1_at11/119+3756934..3763491Serine/threonine protein phosphatase 2A, 65 kDa regulatory subunit A,alpha isoform, putative, expressed
LOC_Os09g07520NANA9+3769533..3769862hypothetical protein
LOC_Os09g07530NANA9+3771215..3773590retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17040.4.S1_at--328--1071Chr09:3749125..3749149 (25 bp)
AGGGAAGGAGGCATTCGACGAGGCG
LOC_Os09g07490
OsAffx.17040.4.S1_at--973--8271Chr09:3749238..3749262 (25 bp)
GGCATGCGGAGGAACGCCTCGTCAT
LOC_Os09g07490
OsAffx.17040.4.S1_at--134--1411NONE
AGCACCACCCCGTAGTAGTAGTCGC
NONE
OsAffx.17040.4.S1_at--708--1791NONE
ACCCCGTAGTAGTAGTCGCGCAGCG
NONE
OsAffx.17040.4.S1_at--410--4231NONE
CCGTAGTAGTAGTCGCGCAGCGCCG
NONE
OsAffx.17040.4.S1_at--525--9411Chr09:3749422..3749446 (25 bp)
TCGTCGCAGCGTCGTCACGTGTTGC
LOC_Os09g07490
OsAffx.17040.4.S1_at--134--3391Chr09:3749428..3749452 (25 bp)
CAGCGTCGTCACGTGTTGCTCGTGG
LOC_Os09g07490
OsAffx.17040.4.S1_at--254--9413Chr09:3749433..3749457 (25 bp)
TCGTCACGTGTTGCTCGTGGGAGGA
LOC_Os09g07490
OsAffx.17040.4.S1_at--26--6171Chr09:3749453..3749477 (25 bp)
GAGGAGGAACCGGTGGAGTTGGACA
LOC_Os09g07490
OsAffx.17040.4.S1_at--50--6051Chr09:3749468..3749492 (25 bp)
GAGTTGGACAAAAACGCGGCGGCCA
LOC_Os09g07490
OsAffx.17040.4.S1_at--228--4492Chr09:3749498..3749522 (25 bp)
GCCGTGGTGGATGCCGGGAGGAGCT
LOC_Os09g07490
Target Sequence 
AGGGAAGGAGGCATTCGACGAGGCGGCGGCGGCGCTCGCGGCGCTGAGAGACGCGGAGCTGGGCCCGCGGCGGAAGGACA
GCGGCGAGGTCCAGGCGGATAGGAGGAGGAGGGGGCATGCGGAGGAACGCCTCGTCATCGTCGTCGCAGCGCTGCTCCCA
TCATCGTCGTCATCGCAACGCCGCCGTCGCCGGCCATCGTCGCAGCGCCGCCGCTGTTGTCGTCGTCGCGCAGCACCACC
CCGTAGTAGTAGTCGCGCAGCGCCGCCCCGTCGTCGTCGTCGCGGCGCCGCCCCCGTCGTCGTCGCAGCGTCGTCACGTG
TTGCTCGTGGGAGGAGGAACCGGTGGAGTTGGACAAAAACGCGGCGGCCAACGGCGCCGTGGTGGATGCCGGGAGGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17040.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis