Browse Element(s) Details


OsAffx.20020.1.S1_x_at

Description tigr:9640.m03805
TID=OsAffx.20020.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3905011/11hypothetical protein
LOC_Os08g193003/11retrotransposon protein, putative, unclassified
LOC_Os01g324901/11hypothetical protein
LOC_Os10g115701/11hypothetical protein
LOC_Os08g052201/11retrotransposon protein, putative, unclassified
LOC_Os08g040601/11retrotransposon protein, putative, unclassified
LOC_Os09g075401/11retrotransposon protein, putative, unclassified
LOC_Os08g218901/11hypothetical protein
LOC_Os11g147501/11expressed protein
LOC_Os08g219201/11retrotransposon protein, putative, unclassified
LOC_Os11g367191/11Lipoxygenase 3, putative, expressed
LOC_Os08g283701/11hypothetical protein
LOC_Os12g319901/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39030OsAffx.20019.1.S1_at10/1112+23973808..23976462BED zinc finger family protein
LOC_Os12g39030Os.50043.1.A1_at1/1112+23973808..23976462BED zinc finger family protein
LOC_Os12g39040NANA12+23979837..23980325retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39050OsAffx.20020.1.S1_x_at11/1112+23994523..23995360hypothetical protein
LOC_Os12g39060OsAffx.20021.1.S1_at11/1112+23995614..23995970hypothetical protein
LOC_Os12g39070Os.54260.1.S1_at11/1112+23997666..24002140TATA-binding protein 2, putative, expressed
LOC_Os12g39070Os.53520.1.A1_at1/1112+23997666..24002140TATA-binding protein 2, putative, expressed
LOC_Os12g39080Os.16012.1.S1_at11/1112+24004084..24006046amino acid permease family protein, putative, expressed
LOC_Os12g39080OsAffx.13037.1.S1_x_at1/1112+24004084..24006046amino acid permease family protein, putative, expressed
LOC_Os12g39090Os.54688.1.S1_at11/1112+24011650..24013552expressed protein
LOC_Os12g39100Os.55696.1.S1_at11/1112+24019122..24021234expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20020.1.S1_x_at--564--2411Chr12:23994563..23994587 (25 bp)
AAAAAAGGAATGACTTGATCCGCGA
LOC_Os12g39050
OsAffx.20020.1.S1_x_at--873--2411Chr12:23994564..23994588 (25 bp)
AAAAAGGAATGACTTGATCCGCGAA
LOC_Os12g39050
OsAffx.20020.1.S1_x_at--1158--2431Chr12:23994565..23994589 (25 bp)
AAAAGGAATGACTTGATCCGCGAAA
LOC_Os12g39050
OsAffx.20020.1.S1_x_at--206--2311Chr12:23994566..23994590 (25 bp)
AAAGGAATGACTTGATCCGCGAAAT
LOC_Os12g39050
OsAffx.20020.1.S1_x_at--698--2931Chr12:23994567..23994591 (25 bp)
AAGGAATGACTTGATCCGCGAAATT
LOC_Os12g39050
OsAffx.20020.1.S1_x_at--232--931Chr12:23994568..23994592 (25 bp)
AGGAATGACTTGATCCGCGAAATTG
LOC_Os12g39050
OsAffx.20020.1.S1_x_at--281--8211Chr12:23994569..23994593 (25 bp)
GGAATGACTTGATCCGCGAAATTGG
LOC_Os12g39050
OsAffx.20020.1.S1_x_at--253--5271Chr12:23994570..23994594 (25 bp)
GAATGACTTGATCCGCGAAATTGGA
LOC_Os12g39050
OsAffx.20020.1.S1_x_at--271--3012Chr12:23994571..23994595 (25 bp)
AATGACTTGATCCGCGAAATTGGAA
LOC_Os12g39050
OsAffx.20020.1.S1_x_at--907--6753Chr12:23994572..23994596 (25 bp)
ATGACTTGATCCGCGAAATTGGAAA
LOC_Os12g39050
OsAffx.20020.1.S1_x_at--735--35752Chr12:23994659..23994683 (25 bp)
CATTCCCGCAACTAATTTGGGATGA
LOC_Os12g39050
Target Sequence 
AAAAAAGGAATGACTTGATCCGCGAAATTGGAAAGGATTTCCATAGAAACTTTTGGGGATTTATTGGGGAAATTGTAGAG
GGGATTGAGAGGATTCCATTCCCGCAACTAATTTGGGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20020.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis