Browse Element(s) Details


OsAffx.1194.1.S1_at

Description gb:NM_189154.1
DB_XREF= gi:34905391
GEN=B1111E11.15
TID=OsAffx.1194.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1111E11.15 (B1111E11.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3139011/11retrotransposon protein, putative, unclassified
LOC_Os07g203801/11retrotransposon protein, putative, unclassified
LOC_Os09g074301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g168501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31340Os.7307.3.S1_x_at2/111+17469349..17471702hypothetical protein
LOC_Os01g31350Os.52447.1.S1_x_at1/111+17473636..17477842retrotransposon, putative, centromere-specific
LOC_Os01g31360Os.15394.1.S1_s_at11/111+17478501..17484691expressed protein
LOC_Os01g31360Os.15394.1.S1_at11/111+17478501..17484691expressed protein
LOC_Os01g31360Os.15394.2.S1_x_at10/111+17478501..17484691expressed protein
LOC_Os01g31360Os.15394.2.S1_at9/111+17478501..17484691expressed protein
LOC_Os01g31370Os.35024.1.S1_at11/111+17486575..17491949glycosyltransferase, putative, expressed
LOC_Os01g31380NANA1+17493401..17494237hypothetical protein
LOC_Os01g31390OsAffx.1194.1.S1_at11/111+17494761..17495450retrotransposon protein, putative, unclassified
LOC_Os01g31400Os.55650.1.A1_at1/111+17496129..17498924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31400OsAffx.21756.5.A1_x_at1/111+17496129..17498924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31410NANA1+17500839..17502878retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31420NANA1+17508549..17512703retrotransposon protein, putative, unclassified
LOC_Os01g31430NANA1+17513767..17516949hypothetical protein
LOC_Os01g31440NANA1+17519804..17521026retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1194.1.S1_at--361--391Chr01:17495366..17495390 (25 bp)
ATCACTGCTCGTAGTGCAATGCCTC
LOC_Os01g31390
OsAffx.1194.1.S1_at--818--6932Chr07:11766712..11766731 (20 bp)
GTAGTGCAATGCCTCTCACATACAA
LOC_Os07g20380
OsAffx.1194.1.S1_at--1129--9291Chr01:17495155..17495179 (25 bp)
TCCCAAGATTTGGAACCCCTAGGAT
LOC_Os01g31390
OsAffx.1194.1.S1_at--951--10853Chr04:9204738..9204967 (25 bp)
TTGGAACCCCTAGGATGGTCATAAG
LOC_Os04g16850
OsAffx.1194.1.S1_at--1152--2591Chr01:17495094..17495118 (25 bp)
AACCTTCCGAAATCTCCTACGAGAG
LOC_Os01g31390
OsAffx.1194.1.S1_at--369--451Chr01:17495083..17495107 (25 bp)
ATCTCCTACGAGAGAAGGGAGCCAA
LOC_Os01g31390
OsAffx.1194.1.S1_at--1155--4571Chr01:17494909..17494931 (23 bp)
GCGCATACAAGCCACCCATTGGAAT
LOC_Os01g31390
OsAffx.1194.1.S1_at--803--9851Chr01:17494904..17494928 (25 bp)
TACAAGCCACCCATTGGAATGTCCC
LOC_Os01g31390
OsAffx.1194.1.S1_at--257--4213Chr09:3712750..3713057 (25 bp)
CCCCTATCAGATAGTCTATGGGAAG
LOC_Os09g07430
OsAffx.1194.1.S1_at--812--7152Chr04:7828226..7828248 (23 bp)
GTCTATGGGAAGTCATGTCGACTCC
NONE
OsAffx.1194.1.S1_at--444--2551Chr01:17494837..17494861 (25 bp)
AACTCGAGCACAGGGCATATTGGGC
LOC_Os01g31390
Target Sequence 
ATCACTGCTCGTAGTGCAATGCCTCTCACATACAATTTGCAAGTCGAGATATTCGATGTTTCGGGTATAGACTTTATGGG
ACCTTTCCCTAAGTCTCGCAACTGCGAGTACATTCTGGTGGCAGTCGACTATGTCTCCAAGTGGGTTGAGGCTATGTCGT
GCAGCGCCGTGGATGCGAAGCATGCCAAGAAGATGTTCATAGAAATCATCTTCCCAAGATTTGGAACCCCTAGGATGGTC
ATAAGTGACGGAGGTTCTCACTTCATTGACAAAACCTTCCGAAATCTCCTACGAGAGAAGGGAGCCAAACACAATGTGGC
CACTCCTTACCATCCACAGACCAGCGCATACAAGCCACCCATTGGAATGTCCCCCTATCAGATAGTCTATGGGAAGTCAT
GTCGACTCCCTGTAGAACTCGAGCACAGGGCATATTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1194.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis