Browse Element(s) Details


Os.15394.1.S1_s_at

Description gb:AK062264.1
DB_XREF= gi:32972282
TID=Os.15394.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15394 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1126_G08.25 (OJ1126_G08.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-047-H09, full insert sequence.
FL= gb:AK062264.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3136011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31310NANA1+17462535..17463156hypothetical protein
LOC_Os01g31320NANA1+17463793..17464293Transposable element protein, putative, Retrotrans_gag
LOC_Os01g31330NANA1+17466169..17466903hypothetical protein
LOC_Os01g31340Os.7307.3.S1_x_at2/111+17469349..17471702hypothetical protein
LOC_Os01g31350Os.52447.1.S1_x_at1/111+17473636..17477842retrotransposon, putative, centromere-specific
LOC_Os01g31360Os.15394.1.S1_s_at11/111+17478501..17484691expressed protein
LOC_Os01g31360Os.15394.1.S1_at11/111+17478501..17484691expressed protein
LOC_Os01g31360Os.15394.2.S1_x_at10/111+17478501..17484691expressed protein
LOC_Os01g31360Os.15394.2.S1_at9/111+17478501..17484691expressed protein
LOC_Os01g31370Os.35024.1.S1_at11/111+17486575..17491949glycosyltransferase, putative, expressed
LOC_Os01g31380NANA1+17493401..17494237hypothetical protein
LOC_Os01g31390OsAffx.1194.1.S1_at11/111+17494761..17495450retrotransposon protein, putative, unclassified
LOC_Os01g31400Os.55650.1.A1_at1/111+17496129..17498924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31400OsAffx.21756.5.A1_x_at1/111+17496129..17498924retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31410NANA1+17500839..17502878retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31420NANA1+17508549..17512703retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15394.1.S1_s_at--903--6871Chr01:17484265..17484289 (25 bp)
GTATTAATGGAAGATTTTGCTCAAA
LOC_Os01g31360
Os.15394.1.S1_s_at--236--9751Chr01:17484304..17484328 (25 bp)
TAATTCTTTGTGTATCTGATGGCCC
LOC_Os01g31360
Os.15394.1.S1_s_at--622--3151Chr01:17484305..17484329 (25 bp)
AATTCTTTGTGTATCTGATGGCCCA
LOC_Os01g31360
Os.15394.1.S1_s_at--783--191Chr01:17484330..17484354 (25 bp)
ATTTCTCTGCGAATGGCTGGTGTTT
LOC_Os01g31360
Os.15394.1.S1_s_at--983--10311Chr01:17484331..17484355 (25 bp)
TTTCTCTGCGAATGGCTGGTGTTTC
LOC_Os01g31360
Os.15394.1.S1_s_at--830--2111Chr01:17484400..17484424 (25 bp)
ACATGGTTAGCTGCCTCTAAAGATG
LOC_Os01g31360
Os.15394.1.S1_s_at--960--9151Chr01:17484411..17484435 (25 bp)
TGCCTCTAAAGATGGCCATTGCCAG
LOC_Os01g31360
Os.15394.1.S1_s_at--1034--9831Chr01:17484417..17484441 (25 bp)
TAAAGATGGCCATTGCCAGTCCGCT
LOC_Os01g31360
Os.15394.1.S1_s_at--498--6231Chr01:17484421..17484445 (25 bp)
GATGGCCATTGCCAGTCCGCTGATC
LOC_Os01g31360
Os.15394.1.S1_s_at--1129--71Chr01:17484655..17484679 (25 bp)
ATTCCTCGATCTTATTCCCCAGAAA
LOC_Os01g31360
Os.15394.1.S1_s_at--841--10651Chr01:17484656..17484680 (25 bp)
TTCCTCGATCTTATTCCCCAGAAAA
LOC_Os01g31360
Target Sequence 
GTATTAATGGAAGATTTTGCTCAAAGACCNGTGAGATCATAATTCTTTGTGTATCTGATGGCCCANATTTCTCTGCGAAT
GGCTGGTGTTTCTCCNTAGAGTATGTGGCAGGGGACCANATGAATTGCTCAACATCAACATGGTTAGCTGCCTCTAAAGA
TGGCCATTGCCAGTCCGCTGATCACCTCCACTGTCAGAGATCATTACGTGATGTATCCTNCTGTATCAGTTTCACCATCC
TAGTGCCTTGTGTCATATCCCAAAAAAAAAAAANAAAACANCANNCTGTACAGTTTAGACTGGATTCATNCCGAGGTGAC
ACTTTGGGTGTGTATGTTAGAGTTCACTGAAAGAGAGCGAACATTTGGCTCTAGAAATACTTTTGTCGTTNNNANATTCC
TCGATCTTATTCCCCAGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15394.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis