Browse Element(s) Details


OsAffx.21756.5.A1_x_at

Description gb:NM_190533.1
DB_XREF= gi:34908149
GEN=P0408C03.17
TID=OsAffx.21756.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0408C03.17 (P0408C03.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g346506/11retrotransposon protein, putative, unclassified
LOC_Os02g444305/11transposon protein, putative, unclassified
LOC_Os02g185905/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g432105/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g491004/11retrotransposon protein, putative, unclassified
LOC_Os03g162503/11transposon protein, putative, unclassified
LOC_Os04g215103/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g363102/11hypothetical protein
LOC_Os01g104101/11transposon protein, putative, unclassified
LOC_Os03g392001/11hypothetical protein
LOC_Os01g314001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34590Os.46054.1.S1_at11/1110+18109186..18112785Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34602Os.46831.1.S1_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.3.S1_x_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_x_at9/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_at4/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34614Os.10059.1.S1_at11/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.10059.2.S1_at10/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.46831.2.S1_x_at1/1110+18121479..18124769expressed protein
LOC_Os10g34630NANA10+18127150..18130107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34640OsAffx.20387.1.S1_x_at1/1110+18130359..18132647transposon protein, putative, unclassified
LOC_Os10g34650Os.55650.1.A1_at7/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.21756.5.A1_x_at6/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.52979.1.S1_at5/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.7307.3.S1_x_at2/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.22646.1.S1_x_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.22143.1.S1_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34660Os.46256.1.S1_at10/1110+18141569..18144973expressed protein
LOC_Os10g34660Os.46256.1.S2_at10/1110+18141569..18144973expressed protein
LOC_Os10g34670Os.12086.1.S1_s_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.32824.1.S1_at11/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.12086.1.S1_at10/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670Os.45957.4.S1_x_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34670OsAffx.13530.1.S1_at1/1110+18145436..18155174prefoldin subunit 5, putative, expressed
LOC_Os10g34680Os.53889.1.S1_at11/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed
LOC_Os10g34680Os.50591.1.S1_at1/1110+18156871..18167124Vps52/Sac2 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21756.5.A1_x_at--780--68145Chr12:1380912..1380936 (25 bp)
GTTTTTGGTGGCGATACAGAGCCGC
NONE
OsAffx.21756.5.A1_x_at--553--102546Chr11:1479613..1479637 (25 bp)
TTTGGTGGCGATACAGAGCCGCCAG
NONE
OsAffx.21756.5.A1_x_at--383--75544Chr11:1479617..1479641 (25 bp)
GTGGCGATACAGAGCCGCCAGAGCC
NONE
OsAffx.21756.5.A1_x_at--827--64740Chr11:1479622..1479646 (25 bp)
GATACAGAGCCGCCAGAGCCGCAAC
NONE
OsAffx.21756.5.A1_x_at--617--1675Chr02:22671831..22671855 (25 bp)
AGCCGCAACTGGTCAGACCGAGCCG
NONE
OsAffx.21756.5.A1_x_at--149--3273Chr02:22671836..22671860 (25 bp)
CAACTGGTCAGACCGAGCCGACGGC
NONE
OsAffx.21756.5.A1_x_at--740--83932Chr11:1516888..1517026 (25 bp)
GGCCCCTACACTGCGGTCAGACCGG
NONE
OsAffx.21756.5.A1_x_at--555--9651Chr01:36390940..36391344 (25 bp)
TCAGACCGGCCAGACAGCTTGTGGA
NONE
OsAffx.21756.5.A1_x_at--965--3411Chr01:36390939..36391343 (25 bp)
CAGACCGGCCAGACAGCTTGTGGAG
NONE
OsAffx.21756.5.A1_x_at--525--5833Chr02:12356812..12357142 (25 bp)
GACCGGCCAGACAGCTTGTGGAGGT
NONE
OsAffx.21756.5.A1_x_at--935--42559Chr12:4784280..4784304 (25 bp)
CCGGTGACCTCTCCGAGGAGATTGT
NONE
Target Sequence 
GTTTTTGGTGGCGATACAGAGCCGCCAGAGCCGCAACTGGTCAGACCGAGCCGACGGCGGTCTGACCGGCCCCTACACTG
CGGTCAGACCGGCCAGACAGCTTGTGGAGGTGTTGCCCGGTGACCTCTCCGAGGAGATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21756.5.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis