Browse Element(s) Details


Os.46831.2.S1_at

Description gb:NM_197094.1
DB_XREF= gi:37535547
TID=Os.46831.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0049A16.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0029C15.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g346024/11csAtPR5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34540Os.46560.1.S1_at11/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34540Os.46560.2.S1_x_at10/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34550OsAffx.8005.1.S1_at11/1110+18096523..18097989hypothetical protein
LOC_Os10g34560OsAffx.30672.1.S1_at11/1110+18099878..18100504hypothetical protein
LOC_Os10g34570OsAffx.8003.1.S1_at7/1110+18103350..18103878hypothetical protein
LOC_Os10g34580Os.46513.1.S1_at11/1110+18104783..18108669FHA domain containing protein, expressed
LOC_Os10g34590Os.46054.1.S1_at11/1110+18109186..18112785Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34602Os.46831.1.S1_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.3.S1_x_at11/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_x_at9/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34602Os.46831.2.S1_at4/1110+18116465..18119997csAtPR5, putative, expressed
LOC_Os10g34614Os.10059.1.S1_at11/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.10059.2.S1_at10/1110+18121479..18124769expressed protein
LOC_Os10g34614Os.46831.2.S1_x_at1/1110+18121479..18124769expressed protein
LOC_Os10g34630NANA10+18127150..18130107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34640OsAffx.20387.1.S1_x_at1/1110+18130359..18132647transposon protein, putative, unclassified
LOC_Os10g34650Os.55650.1.A1_at7/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.21756.5.A1_x_at6/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.52979.1.S1_at5/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.7307.3.S1_x_at2/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650Os.22646.1.S1_x_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34650OsAffx.22143.1.S1_at1/1110+18133875..18139666retrotransposon protein, putative, unclassified
LOC_Os10g34660Os.46256.1.S1_at10/1110+18141569..18144973expressed protein
LOC_Os10g34660Os.46256.1.S2_at10/1110+18141569..18144973expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46831.2.S1_at--208--3251Chr10:18116136..18116160 (25 bp)
CAAGCTCGCTGGCAGGAAGGACGAG
NONE
Os.46831.2.S1_at--233--2931Chr10:18116214..18116238 (25 bp)
AAGGACGAGCTCGTTGGCGGCCAGA
NONE
Os.46831.2.S1_at--407--10872Chr11:16159170..16159189 (20 bp)
TTGGCGGCCAGATGTGTGCGGGCAA
NONE
Os.46831.2.S1_at--604--7751Chr10:18116265..18116289 (25 bp)
GGTGAACTGACGACGCGTCTTCGGT
NONE
Os.46831.2.S1_at--200--1811Chr10:18116277..18116301 (25 bp)
ACGCGTCTTCGGTGGACGGAGTGGT
NONE
Os.46831.2.S1_at--614--5371Chr10:18116309..18116550 (25 bp)
GAAGAAAATTCGTACTCCAATGGAG
NONE
Os.46831.2.S1_at--160--91Chr10:18116316..18116557 (25 bp)
ATTCGTACTCCAATGGAGAAGGACA
NONE
Os.46831.2.S1_at--1158--4291Chr10:18116858..18116882 (25 bp)
CCTTCGACAAAATCAGTCAGTCACT
LOC_Os10g34602
Os.46831.2.S1_at--300--411Chr10:18116869..18116893 (25 bp)
ATCAGTCAGTCACTAGTCGATCTTG
LOC_Os10g34602
Os.46831.2.S1_at--900--9631Chr10:18116874..18116898 (25 bp)
TCAGTCACTAGTCGATCTTGATCCC
LOC_Os10g34602
Os.46831.2.S1_at--96--10071Chr10:18116882..18116906 (25 bp)
TAGTCGATCTTGATCCCCTTTTCAT
LOC_Os10g34602
Target Sequence 
CAAGCTCGCTGGCAGGAAGGACGAGCTGGGGTAGGAGGAGCTCGCTGGTGTGGGGAGGACGAGCTCGCCGGCATGGGGAA
GGACGAGCTCGTTGGCGGCCAGATGTGTGCGGGCAAACGGTGCGAGAGGGGTGAACTGACGACGCGTCTTCGGTGGACGG
AGTGGTATGGAACGAAGAAAATTCGTACTCCAATGGAGAAGGACAAGGTGCAGGAGGAGGCGGGGATCGAGACGAGGGAG
GAGGACGACGACGAGTCCGGGACGAAGAGAGAGCGCGAATCAGGGGAGATCGAAGGAGGCGGAGGAGAGCCGAGCCGGAA
GAAGCGAGACCCCGAGGCGGTGTCGCGCTTCAAGCAGCGGTCGGCGGCGTGGTTCGCCAAGCTCAAGGAGGAGTTCGAGA
GGAAGGTCGCGGAGCATCCCGACGTCGACTGGTCCGACTCGCTGGCCATCGACGCGAGCTCGTATCGCAAGGATTGGGAC
TACGTCTGGAGCCAAGCCTACGGCTCCTTCGACAAAATCAGTCAGTCACTAGTCGATCTTGATCCCCTTTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46831.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis